cluster # 3757

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Schistosoma mansoni
cluster # 3757 cluster # 3757 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3757#0 length = 234 sequences # 1

consensus_3757#1 length = 209 sequences # 1

consensusID : consensus_3757#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [TCCTTCATACTTCTTATGGCAACGGTCTCAAGAAGAACTTTTGGAGGACATTGTTTCAGCTGGCATCGATGCCATAATAATCAAGATCGCCGCTTTTGGACTAACAGTTGAAGATTTTCTTGGGGTTCATCTCAGTAGTATTGCATATAAGCTTCGCCAATTATCAGTTCCCCCTTGGTCTTTAAATGTATGTGGAGAAGGTGGCGAATTTGAGACAGCTACATTGGACTGCCC]

[+] EMBL CD136641             [TCCTTCATACTTCTTATGGCAACGGTCTCAAGAAGAACTTTTGGAGGACATTGTTTCAGCTGGCATCGATGCCATAATAATCAAGATCGCCGCTTTTGGACTAACAGTTGAAGATTTTCTTGGGGTTCATCTCAGTAGTATTGCATATAAGCTTCGCCAATTATCAGTTCCCCCTTGGTCTTTAAATGTATGTGGAGAAGGTGGCGAATTTGAGACAGCTACATTGGACTGCCC]




>consensus_3757#0
TCCTTCATACTTCTTATGGCAACGGTCTCAAGAAGAACTTTTGGAGGACATTGTTTCAGC
TGGCATCGATGCCATAATAATCAAGATCGCCGCTTTTGGACTAACAGTTGAAGATTTTCT
TGGGGTTCATCTCAGTAGTATTGCATATAAGCTTCGCCAATTATCAGTTCCCCCTTGGTC
TTTAAATGTATGTGGAGAAGGTGGCGAATTTGAGACAGCTACATTGGACTGCCC

consensusID : consensus_3757#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [CAAGGTTGACGCGCAGGATGAAGTTCGTTGCCCTTATCGCCGCTTTTGGACTAACAGTTGAAGATTTTCTTGGGGTTCATCTCAGTAGTATTGCATATAAGCTTCGCCAATTATCAGTTCCCCCTTGGTCTTTAAATGTATGTGGAGAAGGTGGCGAATTTGAGACAGTTACATTGGACTGCCCAATTTTTAATAGTAGAATTCGATTA]

[+] EMBL CD122663             [CAAGGTTGACGCGCAGGATGAAGTTCGTTGCCCTTATCGCCGCTTTTGGACTAACAGTTGAAGATTTTCTTGGGGTTCATCTCAGTAGTATTGCATATAAGCTTCGCCAATTATCAGTTCCCCCTTGGTCTTTAAATGTATGTGGAGAAGGTGGCGAATTTGAGACAGTTACATTGGACTGCCCAATTTTTAATAGTAGAATTCGATTA]




>consensus_3757#1
CAAGGTTGACGCGCAGGATGAAGTTCGTTGCCCTTATCGCCGCTTTTGGACTAACAGTTG
AAGATTTTCTTGGGGTTCATCTCAGTAGTATTGCATATAAGCTTCGCCAATTATCAGTTC
CCCCTTGGTCTTTAAATGTATGTGGAGAAGGTGGCGAATTTGAGACAGTTACATTGGACT
GCCCAATTTTTAATAGTAGAATTCGATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3757#0      TCCTTCATACTTCTTATGGCAACGGTCTCAAGAAGAACTTTTGGAGGACATTGTTTCAGC 60
consensus_3757#1      ------------------------------------------------CAAGGTTGACGC 12
                                                                      **  ***   **

consensus_3757#0      TGGCATCGATGCCATAATAATCAAGATCGCCGCTTTTGGACTAACAGTTGAAGATTTTCT 120
consensus_3757#1      GCAGGATGAAGT--TCGTTGCCCTTATCGCCGCTTTTGGACTAACAGTTGAAGATTTTCT 70
                             ** *   *  *   *   ***********************************

consensus_3757#0      TGGGGTTCATCTCAGTAGTATTGCATATAAGCTTCGCCAATTATCAGTTCCCCCTTGGTC 180
consensus_3757#1      TGGGGTTCATCTCAGTAGTATTGCATATAAGCTTCGCCAATTATCAGTTCCCCCTTGGTC 130
                      ************************************************************

consensus_3757#0      TTTAAATGTATGTGGAGAAGGTGGCGAATTTGAGACAGCTACATTGGACTGCCC------ 234
consensus_3757#1      TTTAAATGTATGTGGAGAAGGTGGCGAATTTGAGACAGTTACATTGGACTGCCCAATTTT 190
                      ************************************** ***************      

consensus_3757#0      -------------------
consensus_3757#1      TAATAGTAGAATTCGATTA 209