These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [GTACCCCAAGAATCTCTTGAGCTCACCATCTTCAAATCATTATCGGCATCAGCTTGCTCACATTCATTGTAGAGGTCATGTTCGTATTTCCAAAACTTATGTAAACACTTCTATTAGTGAATTGCTTGACATTTATTCCTCATTTATTCTACCGATCAATATCCCGTATGACGTAACTTATTTCGCAGATTATTCTTCTATTCTACTTGATGTTCGACACTTGTTTTTAGCATTTCAAACAATTTCTTTCTAATTTCCATCAGTGATGCATACGAAATTCAATGTCAGTCTGATGCAAATNTATTTGAAAGATGTATTTTATTGAAACTTGTGATAACCATGTTCAGCAGGATTCTTTGGCAATGGATTGATTATGTGAGTCCACTAATAGATTACTGAGCATCAGCCAAATCTATGTTTATCAAGTACCCAGTTGTGAATG] [+] EMBL CD128760 [GTACCCCAAGAATCTCTTGAGCTCACCATCTTCAAATCATTATCGGCATCAGCTTGCTCACATTCATTGTAGAGGTCATGTTCGTATTTCCAAAACTTATGTAAACACTTCTATTAGTGAATTGCTTGACATTTATTCCTCATTTATTCTACCGATCAATATCCCGTATGACGTAACTTATTTCGCAGATTATTCTTCTATTCTACTTGATGTTCGACACTTGTTTTTAGCATTTCAAACAATTTCTTTCTAATTTCCATCAGTGATGCATACGAAATTCAATGTCAGTCTGATGCAAATNTATTTGAAAGATGTATTTTATTGAAACTTGTGATAACCATGTTCAGCAGGATTCTTTGGCAATGGATTGATTATGTGAGTCCACTAATAGATTACTGAGCATCAGCCAAATCTATGTTTATCAAGTACCCAGTTGTGAATG] consensusID : consensus_3769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [TGACCATCTTCAAAATCATTATCAGCATCAGCTTACTGAAATTCATTGTGGAGGTCATGTTCAAATTTCCAAAACCTATGTGAATTGCCTCATATTTATTCCTCATTTATTCTACCGATCAACATCTCGTATGATGTAACTTACTTTGCAGTTTATTCTTCTATTCTACTTGATGTTTGACACTGGTTTTTAGCATTTCAAACAACTTCTTTCGAATTTTCATATCTGTAGCATTCTTTGACTTTGGATTGATTATGTGAGTTCACTAATCGATTACTGAACATCAGTCAACTGTATGTTTATCGAGTAACCAA] [-] EMBL CD122678 [TGACCATCTTCAAAATCATTATCAGCATCAGCTTACTGAAATTCATTGTGGAGGTCATGTTCAAATTTCCAAAACCTATGTGAATTGCCTCATATTTATTCCTCATTTATTCTACCGATCAACATCTCGTATGATGTAACTTACTTTGCAGTTTATTCTTCTATTCTACTTGATGTTTGACACTGGTTTTTAGCATTTCAAACAACTTCTTTCGAATTTTCATATCTGTAGCATTCTTTGACTTTGGATTGATTATGTGAGTTCACTAATCGATTACTGAACATCAGTCAACTGTATGTTTATCGAGTAACCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3769#0 GTACCCCAAGAATCTCTTGAGCTCACCATCTTCAAA-TCATTATCGGCATCAGCTTGCTC 59 consensus_3769#1 ----------------------TGACCATCTTCAAAATCATTATCAGCATCAGCTTACTG 38 * ************ ******** ********** ** consensus_3769#0 ACATTCATTGTAGAGGTCATGTTCGTATTTCCAAAACTTATGTAAACACTTCTATTAGTG 119 consensus_3769#1 AAATTCATTGTGGAGGTCATGTTCAAATTTCCAAAACCTATGT----------------G 82 * ********* ************ *********** ***** * consensus_3769#0 AATTGCTTGACATTTATTCCTCATTTATTCTACCGATCAATATCCCGTATGACGTAACTT 179 consensus_3769#1 AATTGCCTCATATTTATTCCTCATTTATTCTACCGATCAACATCTCGTATGATGTAACTT 142 ****** * * ***************************** *** ******* ******* consensus_3769#0 ATTTCGCAGATTATTCTTCTATTCTACTTGATGTTCGACACTTGTTTTTAGCATTTCAAA 239 consensus_3769#1 ACTTTGCAGTTTATTCTTCTATTCTACTTGATGTTTGACACTGGTTTTTAGCATTTCAAA 202 * ** **** ************************* ****** ***************** consensus_3769#0 CAATTTCTTTCTAATTTCCATCAGTGATGCATACGAAATTCAATGTCAGTCTGATGCAAA 299 consensus_3769#1 CAACTTCTTTCGAATTTTCAT--------------------------------------A 224 *** ******* ***** *** * consensus_3769#0 TNTATTTGAAAGATGTATTTTATTGAAACTTGTGATAACCATGTTCAGCAGGATTCTTTG 359 consensus_3769#1 TCTGT--------------------------------------------AGCATTCTTTG 240 * * * ** ******** consensus_3769#0 GCAATGGATTGATTATGTGAGTCCACTAATAGATTACTGAGCATCAGCCAAATCTATGTT 419 consensus_3769#1 ACTTTGGATTGATTATGTGAGTTCACTAATCGATTACTGAACATCAGTCAACTGTATGTT 300 * ****************** ******* ********* ****** *** * ****** consensus_3769#0 TATCAAGTACCCAGTTGTGAATG 442 consensus_3769#1 TATCGAGTAACCAA--------- 314 **** **** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||