These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [ACGTTTATTATGAAATAATAGTTTTATTAATTACAAGTGATCAAAGAATACTGGGATAAGAATTCTGTATACATGATAGATTCTTTTTTTGAAGAAAAATAACTTTTATGAAAATAATATATAAATTAGAATGATAAGGTAATTAGCAGTTATTTAAAGAAAATAATAATAATAATTCAATATTTGGGTATTTCGGTTGATTAAGGTTCAGTATATTGTTTGTTGGTGTTGTTGATTGGATACTTGATAACTAGGTTTTAGATAGATGAATTGGAGTATATAATGTTACTGATGCTATACATTCACTACTTGGAATAATCTACATATATATGTAGAAAAAAAATTCATAAGATGATAATTATTTAATGAGTATCAAAGAAAATATATAATATCTGAATTTACAGTGATGAAAGGCAAACATTCTCAAGTACAGATCTATATAGTCGGTCTCAAATTCTACTGTGTGTAACACTGTTGTATCCCGTGGAGAATTATGAATGGTAACTTTGAGGACTATTTATGGACCAATATGATATGTTATATTTCCTATTGTATAATTGTTAAGTAACTAAACTATTCGTATTCGTCTCCCTCTTATCATAGGCTTTA] [+] EMBL CD073301 [ACGTTTATTATGAAATAATAGTTTTATTAATTACAAGTGATCAAAGAATACTGGGATAAGAATTCTGTATACATGATAGATTCTTTTTTTGAAGAAAAATAACTTTTATGAAAATAATATATAAATTAGAATGATAAGGTAATTAGCAGTTATTTAAAGAAAATAATAATAATAATTCAATATTTGGGTATTTCGGTTGATTAAGGTTCAGTATATTGTTTGTTGGTGTTGTTGATTGGATACTTGATAACTAGGTTTTAGATAGATGAATTGGAGTATATAATGTTACTGATGCTATACATTCACTACTTGGAATAATCTACATATATATGTAGAAAAAAAATTCATAAGATGATAATTATTTAATGAGTATCAAAGAAAATATATAATATCTGAATTTACAGTGATGAAAGGCAAACATTCTCAAGTACAGATCTATATAGTCGGTCTCAAATTCTACTGTGTGTAACACTGTTGTATCCCGTGGAGAATTATGAATGGTAACTTTGAGGACTATTTATGGACCAATATGATATGTTATATTTCCTATTGTATAATTGTTAAGTAACTAAACTATTCGTATTCGTCTCCCTCTTATCATAGGCTTTA] consensusID : consensus_380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [TTTTTTTTTTTTTTTTGTATCGGAATACTGTTTTCAGCACTTCATTTTATAATTACACAATTCCATACTTCCTTCTGAACTACCTTCATTTATACAGTTCCTTGTCCACTCATACCTTGCCCGCACTTATTTTTCTTTAACACATTAGGATGTTCTTACCTGATAAATACTTAACTATTCCTCCATGAATATTGTGTGCTCTGCTTTTCGTCCTTTTTTCTTACACCTTTTTCAGCCTCCTGCAGATACTCCAGTATCTTGAGGGGACAAACGGCGTATGAGTCAATCGTCGGTCACCGGCTACCATGGGACTACATCTCCTCACGATACGCCACTGCCTTGTGGATCAAACCTTTAGGTTGAAAGCTCCCGGTGTGG] [+] EMBL AI394916 [TTTTTTTTTTTTTTTTGTATCGGAATACTGTTTTCAGCACTTCATTTTATAATTACACAATTCCATACTTCCTTCTGAACTACCTTCATTTATACAGTTCCTTGTCCACTCATACCTTGCCCGCACTTATTTTTCTTTAACACATTAGGATGTTCTTACCTGATAAATACTTAACTATTCCTCCATGAATATTGTGTGCTCTGCTTTTCGTCCTTTTTTCTTACACCTTTTTCAGCCTCCTGCAGATACTCCAGTATCTTGAGGGGACAAACGGCGTATGAGTCAATCGTCGGTCACCGGCTACCATGGGACTACATCTCCTCACGATACGCCACTGCCTTGTGGATCAAACCTTTAGGTTGAAAGCTCCCGGTGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_380#0 ACGTTTATTATGAAATAATAGTTTTATTAATTACAAGTGATCAAAGAATACTGGGATAAG 60 consensus_380#1 ------------------------------------------------------------ consensus_380#0 AATTCTGTATACATGATAGATTCTTTTTTTGAAGAAAAATAACTTTTATGAAAATAATAT 120 consensus_380#1 ------------------------------------------------------------ consensus_380#0 ATAAATTAGAATGATAAGGTAATTAGCAGTTATTTAAAGAAAATAATAATAATAATTCAA 180 consensus_380#1 ------------------------------------------------------------ consensus_380#0 TATTTGGGTATTTCGGTTGATTAAGGTTCAGTATATTGTTTGTTG-GTGTTGTTGATTGG 239 consensus_380#1 --------TTTTTTTTTTTTTTTTGTATCGGAATACTGTTTTCAGCACTTCATTTTATAA 52 * *** ** ** * ** * *** ***** * * ** * consensus_380#0 ATACTTGATAACTAGGTTTTAGATAGATGAATTGGAGTATATAATGTTACTGATGCTATA 299 consensus_380#1 TTACACAATTCCATACTTCCTTCTGAACTACCTTCATT-TATACAGTTCCTTGT-CCACT 110 *** ** * ** * * * * * * **** *** ** * * * consensus_380#0 CATTCACTACTTGGAATAATCTACATATATATGTAGAAAAAAAATTCATAAGATGATAAT 359 consensus_380#1 CATACCTTGCCCGCACTTATTTTTCTTTA---ACACATTAGGATGTTCTTACCTGATAAA 167 *** * * * * * * ** * * ** * * * * * * * ****** consensus_380#0 TATTTAATGAGTATCAAAGAAAATATATAATATCTGAATTTACAGTGATGAAAGGCAAAC 419 consensus_380#1 TACTTAACTATTCCTCCATGAA-TATTGTGTGCTCTGCTTTTCGTCCTTTTTTCTTACAC 226 ** **** * * * ** *** * *** * * * ** consensus_380#0 ATTCTCAAGTACAGATCTATATAGTCGGTCTCAAATTCTACTGTGTGTAACACTGTTGTA 479 consensus_380#1 CTTTTT-----CAGCCTCCTGCAGATACTCCAGTATCTTGAGGGGACAAACGGCGTATGA 281 ** * *** * ** ** ** * * * *** ** * consensus_380#0 TCCCGTGGAGAATTATGAATGGTAACTTTGAGGACTATTTATGGACCAATATGATATGTT 539 consensus_380#1 GTCAATCGTCGGTCAC---CGGCTACCATG-GGACTACATCT----CCTCACGATACGCC 333 * * * * * ** ** ** ****** * * * * **** * consensus_380#0 ATATTTCCTATTGTATAATTGTTAAGTAACTAAACTATTCGTATTCGTCTCCCTCTTATC 599 consensus_380#1 AC-TGCCTTGTGGATCAAACCTTTAGGTTGAAAGCTCCCGGTGTGG-------------- 378 * * * * * * ** ** ** ** ** ** * consensus_380#0 ATAGGCTTTA 609 consensus_380#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||