These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATAATTAGGATAATATTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAGTTTTGTTTTGTTAAAAGATTTCGCATATGCTCAAAGCCAGATTCAATGAGATAATGAAATTGTGGATCTTTGACCAAGTCTGCTAATTCATCACCAACAAACAATTGTTCTGGGCTTGGTAACAGGGAAATTACATCCACACCATTTTTATAAAGATTTGAAACAAGGGCACATATAAAACTTTGTGTACATATTTGAATAGGATCATGAATATCACCAGAAGTAGACCATTCATCCATTCGAATTGCTTGACACCAAATATATAATAATAGCTCATCTCGTACAATCATTGGATTCTGACAATCGTCATCATCATCATAACCACTATTATTTGGTCTTAAATCTAATACATTTTGTAAAATATCAATTAATGTGAAAGCACGTCGAAAATGCATAATCAT] [+] EMBL CD073401 [AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATAATTAGGATAATATTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAGTTTTGTTTTGTTAAAAGATTTCGCATATGCTCAAAGCCAGATTCAATGAGATAATGAAATTGTGGATCTTTGACCAAGTCTGCTAATTCATCACCAACAAACAATTGTTCTGGGCTTGGTAACAGGGAAATTACATCCACACCATTTTTATAAAGATTTGAAACAAGGGCACATATAAAACTTTGTGTACATATTTGAATAGGATCATGAATATCACCAGAAGTAGACCATTCATCCATTCGAATTGCTTGACACCAAATATATAATAATAGCTCATCTCGTACAATCATTGGATTCTGACAATCGTCATCATCATCATAACCACTATTATTTGGTCTTAAATCTAATACATTTTGTAAAATATCAATTAATGTGAAAGCACGTCGAAAATGCATAATCAT] consensusID : consensus_3801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence [AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATGAATTAGGATAATACTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAAATTTGGTTTAGTTAAAAGATTTCGGCATATGCTCAAAGCCAGATTCCAATGAGATAATGAAATTGTGGAATCTTTGAAAAACACCCGGAAAAT] [+] EMBL AI026175 [AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATGAATTAGGATAATACTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAAATTTGGTTTAGTTAAAAGATTTCGGCATATGCTCAAAGCCAGATTCCAATGAGATAATGAAATTGTGGAATCTTTGAAAAACACCCGGAAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3801#0 AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATAT-AATTA 59 consensus_3801#1 AAGTTTTATTTATACAAACAAATTATCTTAGAATACATAAATAAATACATATATGAATTA 60 ****************************************************** ***** consensus_3801#0 GGATAATATTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAGTTTT 119 consensus_3801#1 GGATAATACTTTATACACATATATCAGTCATTACAACATCTTCCAATGTATTACAAATTT 120 ******** ********************************************** *** consensus_3801#0 GTTTT-GTTAAAAGATTTCG-CATATGCTCAAAGCCAGATTC-AATGAGATAATGAAATT 176 consensus_3801#1 GGTTTAGTTAAAAGATTTCGGCATATGCTCAAAGCCAGATTCCAATGAGATAATGAAATT 180 * *** ************** ********************* ***************** consensus_3801#0 GTGGA-TCTTTGACCAA-GTCTGCTAATTCATCACCAACAAACAATTGTTCTGGGCTTGG 234 consensus_3801#1 GTGGAATCTTTGAAAAACACCCGGAAAAT------------------------------- 209 ***** ******* ** * * ** * consensus_3801#0 TAACAGGGAAATTACATCCACACCATTTTTATAAAGATTTGAAACAAGGGCACATATAAA 294 consensus_3801#1 ------------------------------------------------------------ consensus_3801#0 ACTTTGTGTACATATTTGAATAGGATCATGAATATCACCAGAAGTAGACCATTCATCCAT 354 consensus_3801#1 ------------------------------------------------------------ consensus_3801#0 TCGAATTGCTTGACACCAAATATATAATAATAGCTCATCTCGTACAATCATTGGATTCTG 414 consensus_3801#1 ------------------------------------------------------------ consensus_3801#0 ACAATCGTCATCATCATCATAACCACTATTATTTGGTCTTAAATCTAATACATTTTGTAA 474 consensus_3801#1 ------------------------------------------------------------ consensus_3801#0 AATATCAATTAATGTGAAAGCACGTCGAAAATGCATAATCAT 516 consensus_3801#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||