These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_381#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [ATTAATCGGTGTTATTCAAGATTCAAAATGTTTAATGAAAGGCATTACGATTTATGGGATATTAGGTGATCAACAAGCATCACTTGTTGCACAAACATGGGGACTGTCTTGTTCTGTAAATGAAAATAATTTGTATGGGACTGGAGCATTTATGCTATGGAATATTGGTTGTCAACCATATTTTTCAGATAAAGGTGTTCTAACCACAATAGCTTATAAAATGGGTTCAAAAGGAAGACCATATTATGCTTTAGAGGGTGCTATATCATTNNNNNNNNNNNNNNNNNNNNNNNNAAGACTAAACTGGATGCGTTTAAAGATGATGCAGAATGTGAGAAATTGTCTGCTTCAGTATACGGGAAACAAGGATTTAATGAACCAGATCCATGCTATTTGGTTCCAGCATTTAGTGGTCTTTTCTGTCCATGGTGGCAAGAAAGTATGTTGATAAATCTGATCTTATTTATGCTGGCTTAAGATCATCTGTATATCAAACATATGATGTTCTCTTTGTGGCTACTTTAGCTAAAGCTAATAATAAATACCATTCACTAGCTCCATTAATGACATTAAAAAAACCAACTGAAATTATGGTTGATGGTGGAATGTCCAATAGTGACACACTCATATCATTCTGATGTATGACTGCATTNGTG] [+] EMBL CD080905 [ATTAATCGGTGTTATTCAAGATTCAAAATGTTTAATGAAAGGCATTACGATTTATGGGATATTAGGTGATCAACAAGCATCACTTGTTGCACAAACATGGGGACTGTCTTGTTCTGTAAATGAAAATAATTTGTATGGGACTGGAGCATTTATGCTATGGAATATTGGTTGTCAACCATATTTTTCAGATAAAGGTGTTCTAACCACAATAGCTTATAAAATGGGTTCAAAAGGAAGACCATATTATGCTTTAGAGGGTGCTATATCATTNNNNNNNNNNNNNNNNNNNNNNNNAAGACTAAACTGGATGCGTTTAAAGATGATGCAGAATGTGAGAAATTGTCTGCTTCAGTATACGGGAAACAAGGATTTAATGAACCAGATCCATGCTATTTGGTTCCAGCATTTAGTGGTCTTTTCTGTCCATGGTGGCAAGAAAGTATGTTGATAAATCTGATCTTATTTATGCTGGCTTAAGATCATCTGTATATCAAACATATGATGTTCTCTTTGTGGCTACTTTAGCTAAAGCTAATAATAAATACCATTCACTAGCTCCATTAATGACATTAAAAAAACCAACTGAAATTATGGTTGATGGTGGAATGTCCAATAGTGACACACTCATATCATTCTGATGTATGACTGCATTNGTG] consensusID : consensus_381#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [TAATTTATTAAATAGATGAATTAACTAATAATAAGATAGTTTGTTTTAAAATGAAGTTAAAATTATCGTCTATATATATGTGGAAGTATAGAGTAAACAGATCATTTAATTCTTTGACCAACGAACAGTCCAAGTAAAAATAAACCAATAGCTGTTAGACCAAACGATATTTTTTGTGAATTCAATGAACACTGATTTTTTTTAATTCTGTTCTCATTTTCACATTCCTCATTACAAATAAGATCCAATGAATCGAGAAGTGTATTCTGTGATTCATTTATTGATTTATTGGGTATCCAGTGTAAACTTCGTTTAACTGATTCATGCCAACCGTATAATTTAACTGCACGATCATTTGAACTAATTTTTGAATAAAATGTTGACTGATAATCATCTGATTTATAAGATGAATATTCTCGAATTTTTAATAACCCAGTTGGATCAATATCCAGTGCTAATGCCACAGTAATTGCTGCACCTAATGCAGTCATAACATCAGAATGATTATGACGTCGAACAGTTACATTCAAAATGTCAGCTAAACTTTGCATAAGAGTGTCACTATTGGACATTCCACCATCAACCATAATTTCAGTTGGTTNTTTTAATGTCATTAATGGAGCTA] [+] EMBL CD074738 [TAATTTATTAAATAGATGAATTAACTAATAATAAGATAGTTTGTTTTAAAATGAAGTTAAAATTATCGTCTATATATATGTGGAAGTATAGAGTAAACAGATCATTTAATTCTTTGACCAACGAACAGTCCAAGTAAAAATAAACCAATAGCTGTTAGACCAAACGATATTTTTTGTGAATTCAATGAACACTGATTTTTTTTAATTCTGTTCTCATTTTCACATTCCTCATTACAAATAAGATCCAATGAATCGAGAAGTGTATTCTGTGATTCATTTATTGATTTATTGGGTATCCAGTGTAAACTTCGTTTAACTGATTCATGCCAACCGTATAATTTAACTGCACGATCATTTGAACTAATTTTTGAATAAAATGTTGACTGATAATCATCTGATTTATAAGATGAATATTCTCGAATTTTTAATAACCCAGTTGGATCAATATCCAGTGCTAATGCCACAGTAATTGCTGCACCTAATGCAGTCATAACATCAGAATGATTATGACGTCGAACAGTTACATTCAAAATGTCAGCTAAACTTTGCATAAGAGTGTCACTATTGGACATTCCACCATCAACCATAATTTCAGTTGGTTNTTTTAATGTCATTAATGGAGCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_381#0 ATTAATCGGTGTTATTCAAGATTCAAAATGTTTAATGAAAGGCATTACGATTTATGGGAT 60 consensus_381#1 -----------------------------------------------TAATTTATTAAAT 13 ****** ** consensus_381#0 A--TTAGGTGATCAACAAGCATCACTTGTTGCACAAACATGGGGACTGTCTTGTTCTGTA 118 consensus_381#1 AGATGAATTAACTAATAA-TAAGATAGTTTGTTTTAAAATGAAGTTAAAATTATCGTCTA 72 * * * * * ** ** * * *** ** *** * ** * * ** consensus_381#0 AATGAAAATAATTTGTATGGGACTGGAGCATTTATGCTATGGAATATTGGTTGTCAACCA 178 consensus_381#1 TAT-------ATATGTGGAAGTATAGAGTAAACAGATCATTTAATTCT--TTGACCAACG 123 ** ** *** * * *** * * ** *** * *** * * * consensus_381#0 TATTTTTCAGATAAAGGTGTTCTAACCACAAT-AGCTTATAAAATGGGTTCAAAAGGAAG 237 consensus_381#1 AACAGTCCAAGTAAAAATAAACCAATAGCTGTTAGACCAAACGATATTTTTTGTGAATTC 183 * * ** **** * * ** * * ** * * ** ** consensus_381#0 ACCATATTATGCTTTAGAGGGTGCTATATCATTNNNNNNNNNNNNNNNNNNNNNNNNAAG 297 consensus_381#1 AATGAACACTGATTT------TTTTTAATTCTGTTCTCATTTTCACATTCCTCATTACAA 237 * * ** *** * * ** * * consensus_381#0 ACTAAACTGGATGCGTTTAAAGATG-ATGCAGAATGTGAGAAATTGTCTGCTTCAGTATA 356 consensus_381#1 ATAAGATCCAATGAATCGAGAAGTGTATTCTGTGATTCATTTATTGATTTATTGGGTATC 297 * * * *** * * * ** ** * * * * **** * ** **** consensus_381#0 CGGG--AAACAAGGATTTAATGAACCAGATC---CATGCTATTTGGTTCCAGCATTTAGT 411 consensus_381#1 CAGTGTAAACTTCGTTTAACTGATTCATGCCAACCGTATAATTTAACTGCACGATCATTT 357 * * **** * ** * *** ** * * * **** * ** ** * consensus_381#0 GGTCT--TTTCTGTCCATGGTGGCAA--GAAAGTATGTTGATAAATCTGATCT-TATTTA 466 consensus_381#1 GAACTAATTTTTGAATAAAATGTTGACTGATAATCATCTGATTTATAAGATGAATATTCT 417 * ** *** ** * ** * ** * * **** ** *** **** consensus_381#0 TGCTGGCTTAAGATCATCTGTATATCAAA--CATATGATGTTCTCTTTGTGGCTACTTTA 524 consensus_381#1 CGAATTTTTAATAACCCAGTTGGATCAATATCCAGTGCTAATGCCACAGTAATTGCTGCA 477 * **** * * * ***** * ** * * * ** * ** * consensus_381#0 GCTAAAGC--TAATAATAA-ATACCATTCACTAGCTCCATTAATGACATTAAAAAAACCA 581 consensus_381#1 CCTAATGCAGTCATAACATCAGAATGATTATGACGTCGAACAGTTACATTCAAAATGTCA 537 **** ** * **** * * * * * * ** * * * ***** **** ** consensus_381#0 ACTGAAATT-----ATGGTTG--ATGGTGGAATGTCCAATAGTGACACACTCATATCATT 634 consensus_381#1 GCTAAACTTTGCATAAGAGTGTCACTATTGGACATTCCACCATCA-ACCATAATTTCAGT 596 ** ** ** * * ** * * * * * * * * * ** * ** *** * consensus_381#0 CTGATGTATGACTG-CATTNGTG------ 656 consensus_381#1 TGGTTNTTTTAATGTCATTAATGGAGCTA 625 * * * * * ** **** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||