These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [CGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGACTTGATGAAATACTTTAATGATTATAGTTATTAGGAAAATATGTGTGCAAGTGAATGAGTTGAAACATGACAGTCTATTTCAAAAATAGCAAATACTCAATTTGATAATAGAAACTATCAATTTTATCAGTTCAACTTATCAATTAGGTTGAAAAGTTTGGTATAATCTTTTTGGACGCAATATTGTTGTTGATTTACAGAATTGGTTTTTATGATCAACTTTGGAAGCCAATAATTTTTGACTCGATGAAAACGCTCAGACGGATCAACATTTTGTAAAAGTCGTCTAATCCAGTATAAAAGACGTCCA] [+] EMBL AI977523 [CGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGACTTGATGAAATACTTTAATGATTATAGTTATTAGGAAAATATGTGTGCAAGTGAATGAGTTGAAACATGACAGTCTATTTCAAAAATAGCAAATACTCAATTTGATAATAGAAACTATCAATTTTATCAGTTCAACTTATCAATTAGGTTGAAAAGTTTGGTATAATCTTTTTGGACGCAATATTGTTGTTGATTTACAGAATTGGTTTTTATGATCAACTTTGGAAGCCAATAATTTTTGACTCGATGAAAACGCTCAGACGGATCAACATTTTGTAAAAGTCGTCTAATCCAGTATAAAAGACGTCCA] consensusID : consensus_3834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [TATATTAAAATACGTGGATGATTATGGTTGTTAGAAAAACAGGTGTGCAAGTGAATGAGTTAAAAGTTTAAACAAAAACCATGAATATGCTATGTATGTTTATACAAATTAAATAAAGCAATCATAAACGAAATTCTATCAGAAATAAATACTAGCGTTGATAATAGAAGCTATAAATTTTATCAGTTCAACTTATCAATTAGATTGAAAAGTTTGGTAAAATCTCTTTGGGCGCAGTCCTGTTGTTGACTGATAAAATTGGTTTTTATGAGCAATTTCGGAAGCCAATCATTTATGACTTTATGGAAACGCTCAAACGGATCAATACTTTGTAAAAG] [+] EMBL CD135701 [TATATTAAAATACGTGGATGATTATGGTTGTTAGAAAAACAGGTGTGCAAGTGAATGAGTTAAAAGTTTAAACAAAAACCATGAATATGCTATGTATGTTTATACAAATTAAATAAAGCAATCATAAACGAAATTCTATCAGAAATAAATACTAGCGTTGATAATAGAAGCTATAAATTTTATCAGTTCAACTTATCAATTAGATTGAAAAGTTTGGTAAAATCTCTTTGGGCGCAGTCCTGTTGTTGACTGATAAAATTGGTTTTTATGAGCAATTTCGGAAGCCAATCATTTATGACTTTATGGAAACGCTCAAACGGATCAATACTTTGTAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3834#0 --CGGTAATGCAGCTGCATGGC-ATGTTTTTTTTTTTTTTTTTTTTTTTTTTGACTTGAT 57 consensus_3834#1 TATATTAAAATACGTGGATGATTATGGTTGTTAGAAAAACAGGTGTGCAAGTGAATGAGT 60 *** * ** *** *** ** ** * * *** * * consensus_3834#0 GAAATACTTTAATGATTATAGTTATTAGGAAAATATGTGTGCAAGTGAATGAGTTGAAAC 117 consensus_3834#1 TAAAAGTTTAAACAAAAACCATGAATATGCTA-TGTATGTTTATACAAATTAAATAAAGC 119 *** ** ** * * * * ** * * * * *** * *** * * ** * consensus_3834#0 A-TGACAGTCTA--TTTCAAAAATAGCAAATACTCAATTTGATAATAGAAACTATCAATT 174 consensus_3834#1 AATCATAAACGAAATTCTATCAGAAATAAATACTAGCGTTGATAATAGAAGCTATAAATT 179 * * * * * * ** * * * ******* ************ **** **** consensus_3834#0 TTATCAGTTCAACTTATCAATTAGGTTGAAAAGTTTGGTATAATCTTTTTGGACGCAATA 234 consensus_3834#1 TTATCAGTTCAACTTATCAATTAGATTGAAAAGTTTGGTAAAATCTCTTTGGGCGCAGTC 239 ************************ *************** ***** ***** **** * consensus_3834#0 TTGTTGTTGATTTACAGAATTGGTTTTTATGATCAACTTTGGAAGCCAATAATTTTTGAC 294 consensus_3834#1 CTGTTGTTGACTGATAAAATTGGTTTTTATGAGCAATTTCGGAAGCCAATCATTTATGAC 299 ********* * * * *************** *** ** ********** **** **** consensus_3834#0 TCGATGAAAACGCTCAGACGGATCAACATTTTGTAAAAGTCGTCTAATCCAGTATAAAAG 354 consensus_3834#1 TTTATGGAAACGCTCAAACGGATCAATACTTTGTAAAAG--------------------- 338 * *** ********* ********* * ********** consensus_3834#0 ACGTCCA 361 consensus_3834#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||