These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [CACTGTGCTTCATGTATCACCAATGGGTGGTCTACACCATTGCCCTGTGAAGATCTTCTTGTAAGCTCATCATATTCCTCTGCATAGCTATAAAGAATGTCGATTGATTTCATTGCTTTGCTACTTAGTCCCGTAACAAATACATCTTCATTTGCGATAGACATAGCACGTGATGCTCTTCTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGTCCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGTAAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCAGAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACCAAGCCTTTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCACCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTAGCATAGCATCACCAGTTAAAGCTCCAACAGCCA] [+] EMBL CD178283 [CACTGTGCTTCATGTATCACCAATGGGTGGTCTACACCATTGCCCTGTGAAGATCTTCTTGTAAGCTCATCATATTCCTCTGCATAGCTATAAAGAATGTCGATTGATTTCATTGCTTTGCTACTTAGTCCCGTAACAAATACATCTTCATTTGCGATAGACATAGCACGTGATGCTCTTCTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGTCCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGTAAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCAGAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACCAAGCCTTTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCACCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTAGCATAGCATCACCAGTTAAAGCTCCAACAGCCA] consensusID : consensus_3846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CTTCATGTTTTACCAATGGTTGTTCTACACCATTGTCCTGTGAAGATCTTCTTGTAAGCTCATCATATTCCTCTGCATAGCTNTGCTACTTAGTCCCGTAACAAATACATCTTCATNTGCGATAGACATAGCACGTGATGCTCTTCTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGTCCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGTAAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCAGAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACCAAGCCTCTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCACCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTA] [-] EMBL CD178890 [CTTCATGTTTTACCAATGGTTGTTCTACACCATTGTCCTGTGAAGATCTTCTTGTAAGCTCATCATATTCCTCTGCATAGCTNTGCTACTTAGTCCCGTAACAAATACATCTTCATNTGCGATAGACATAGCACGTGATGCTCTTCTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGTCCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGTAAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCAGAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACCAAGCCTCTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCACCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3846#0 CACTGTGCTTCATGTATCACCAATGGGTGGTCTACACCATTGCCCTGTGAAGATCTTCTT 60 consensus_3846#1 -------CTTCATGTTTTACCAATGGTTGTTCTACACCATTGTCCTGTGAAGATCTTCTT 53 ******** * ******** ** ************ ***************** consensus_3846#0 GTAAGCTCATCATATTCCTCTGCATAGCTATAAAGAATGTCGATTGATTTCATTGCTTTG 120 consensus_3846#1 GTAAGCTCATCATATTCCTCTGCATAGCTNT----------------------------G 85 ***************************** * * consensus_3846#0 CTACTTAGTCCCGTAACAAATACATCTTCATTTGCGATAGACATAGCACGTGATGCTCTT 180 consensus_3846#1 CTACTTAGTCCCGTAACAAATACATCTTCATNTGCGATAGACATAGCACGTGATGCTCTT 145 ******************************* **************************** consensus_3846#0 CTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGT 240 consensus_3846#1 CTACATGATGTAGGATCAAGTTGTGATAGTCTTCTGGTTTGCCCAGGTACTGCTAAAAGT 205 ************************************************************ consensus_3846#0 CCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGT 300 consensus_3846#1 CCACCTGGAGCCAAAGATGGTCTTACAGAACTTAAACGACGGGTTACTGGAGCTACAGGT 265 ************************************************************ consensus_3846#0 AAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCA 360 consensus_3846#1 AAATTAAGTAGTGCTCTTTCACGATCTTCTTTTTCAAGCTTTTTTTCAGCCCGATATTCA 325 ************************************************************ consensus_3846#0 GAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACC 420 consensus_3846#1 GAAGTTAAGCTTAATATTTTCTCCGCCATGAAAAAGAAATATACACCACCCAAAGCAACC 385 ************************************************************ consensus_3846#0 AAGCCTTTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCA 480 consensus_3846#1 AAGCCTCTCATAATTGCTATACGTTCACTATTTTCTTCCTTAGATGATATCACTTCACCA 445 ****** ***************************************************** consensus_3846#0 CCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTAGCATAGCATCA 540 consensus_3846#1 CCATAATCATGACCTTGACCACCGCTTATAGCATGAGGAAGTAAATGTA----------- 494 ************************************************* consensus_3846#0 CCAGTTAAAGCTCCAACAGCCA 562 consensus_3846#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||