These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 809 fasta sequence [CTTCCCTGTGTATTTATGTGCTCCAATCCTATTATTAGCCTATGCCTTGCCTAGTTGCGGCTTATTCGATTTGACTGTAAATTTGCCTCGGTATTTGCTCGCATACATATTCACCTCTCTGTTTCAAATTCGCTCGATGTGCTTATAGCCTTGTGATCTGTGCTGTCCTCTAATAAACTGCAGTTGCCACTTTTCATTGCCTTCTGATTTCAAACACTATAGGATTTATATAACAACATTTATCAAGGTGATTGACTAACGAAGCTAAGTCACCACAATTGAAATAGTAAAGCGTCATTGAGATCATTCATTTGCTACTCTGATCAGTGGCTTGTNGGAGTGGGAATGGGTATGACCTATCACTCATGTGACANAAGAAAGGAGGNGTTTACTGTTTATTATTACTCCTAATCTGGCCATTATATTCTACAAACTAACCCGGAAAAAAACCCAGGGACCAACCCCCTTTATGGTTCCAAAACCGGAAGAACTTATGGCCGGGCCATGGGAATAAACCCCAAACCTTTGCCCAAAAAAACTTTTATATTTTTCCCTTCCCCCAAATTTATGGGCCCCTTTTTTTTAACCCCCCATTTACCACTAAAATTTTCCCACCCCTTAAAAAAAGGGGAGGTGCCCCCCGGATATTAAAACGCCCCCCCCCCCAATTACACCCTGTGTTTTCTCTGGGGAGAGGGGGCCAAAAACGCGGGTTTTATAAAAAATGGCGCCCCCCCTTTTGCGAGAAAATAATTTTTTTCCCCCGGAAAAAAAAAGAAAGGGCCCCCCCCCCCCCGCTTGTTTTTTTN] [+] EMBL CD079330 [CTTCCCTGTGTATTTATGTGCTCCAATCCTATTATTAGCCTATGCCTTGCCTAGTTGCGGCTTATTCGATTTGACTGTAAATTTGCCTCGGTATTTGCTCGCATACATATTCACCTCTCTGTTTCAAATTCGCTCGATGTGCTTATAGCCTTGTGATCTGTGCTGTCCTCTAATAAACTGCAGTTGCCACTTTTCATTGCCTTCTGATTTCAAACACTATAGGATTTATATAACAACATTTATCAAGGTGATTGACTAACGAAGCTAAGTCACCACAATTGAAATAGTAAAGCGTCATTGAGATCATTCATTTGCTACTCTGATCAGTGGCTTGTNGGAGTGGGAATGGGTATGACCTATCACTCATGTGACANAAGAAAGGAGGNGTTTACTGTTTATTATTACTCCTAATCTGGCCATTATATTCTACAAACTAACCCGGAAAAAAACCCAGGGACCAACCCCCTTTATGGTTCCAAAACCGGAAGAACTTATGGCCGGGCCATGGGAATAAACCCCAAACCTTTGCCCAAAAAAACTTTTATATTTTTCCCTTCCCCCAAATTTATGGGCCCCTTTTTTTTAACCCCCCATTTACCACTAAAATTTTCCCACCCCTTAAAAAAAGGGGAGGTGCCCCCCGGATATTAAAACGCCCCCCCCCCCAATTACACCCTGTGTTTTCTCTGGGGAGAGGGGGCCAAAAACGCGGGTTTTATAAAAAATGGCGCCCCCCCTTTTGCGAGAAAATAATTTTTTTCCCCCGGAAAAAAAAAGAAAGGGCCCCCCCCCCCCCGCTTGTTTTTTTN] consensusID : consensus_3903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [TCACCACAATTGAAATAGTAAAGCGTCATTGAGATCATTCATTTGCTACTCTGATCAGTGGCTTGTGGGAGTGGGAATGGGTATGACCTATCACTCATGTGACAAAAGAAAGGAGGGGTTTACTGTTTATTATTACTCCTAATCTGGTCATTATAATCTACAAACTAAACAAGAAAAAAACAAGGGACCAACCCATCATTTTCTGTCGGAAAAATCATGCGGTCAATGAATAGACAAACTATGCGAAAAACTTTATTTTCCATCCCAACTATCGTCCTTTTTTAACCACATCTACATCAATTCCAACCTTAATAATGATGTTCCTGATATAAAGCATACATAATTAGCTTGTTTTCTGTGATTGGCAATACTGTTTATAGATTGCAGACATATGAAAATAATTAGCGAAATAAATGAACTC] [-] EMBL CD073607 [TCACCACAATTGAAATAGTAAAGCGTCATTGAGATCATTCATTTGCTACTCTGATCAGTGGCTTGTGGGAGTGGGAATGGGTATGACCTATCACTCATGTGACAAAAGAAAGGAGGGGTTTACTGTTTATTATTACTCCTAATCTGGTCATTATAATCTACAAACTAAACAAGAAAAAAACAAGGGACCAACCCATCATTTTCTGTCGGAAAAATCATGCGGTCAATGAATAGACAAACTATGCGAAAAACTTTATTTTCCATCCCAACTATCGTCCTTTTTTAACCACATCTACATCAATTCCAACCTTAATAATGATGTTCCTGATATAAAGCATACATAATTAGCTTGTTTTCTGTGATTGGCAATACTGTTTATAGATTGCAGACATATGAAAATAATTAGCGAAATAAATGAACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3903#0 CTTCCCTGTGTATTTATGTGCTCCAATCCTATTATTAGCCTATGCCTTGCCTAGTTGCGG 60 consensus_3903#1 ------------------------------------------------------------ consensus_3903#0 CTTATTCGATTTGACTGTAAATTTGCCTCGGTATTTGCTCGCATACATATTCACCTCTCT 120 consensus_3903#1 ------------------------------------------------------------ consensus_3903#0 GTTTCAAATTCGCTCGATGTGCTTATAGCCTTGTGATCTGTGCTGTCCTCTAATAAACTG 180 consensus_3903#1 ------------------------------------------------------------ consensus_3903#0 CAGTTGCCACTTTTCATTGCCTTCTGATTTCAAACACTATAGGATTTATATAACAACATT 240 consensus_3903#1 ------------------------------------------------------------ consensus_3903#0 TATCAAGGTGATTGACTAACGAAGCTAAGTCACCACAATTGAAATAGTAAAGCGTCATTG 300 consensus_3903#1 -----------------------------TCACCACAATTGAAATAGTAAAGCGTCATTG 31 ******************************* consensus_3903#0 AGATCATTCATTTGCTACTCTGATCAGTGGCTTGTNGGAGTGGGAATGGGTATGACCTAT 360 consensus_3903#1 AGATCATTCATTTGCTACTCTGATCAGTGGCTTGTGGGAGTGGGAATGGGTATGACCTAT 91 *********************************** ************************ consensus_3903#0 CACTCATGTGACANAAGAAAGGAGGNGTTTACTGTTTATTATTACTCCTAATCTGGCCAT 420 consensus_3903#1 CACTCATGTGACAAAAGAAAGGAGGGGTTTACTGTTTATTATTACTCCTAATCTGGTCAT 151 ************* *********** ****************************** *** consensus_3903#0 TATATTCTACAAACTAACCCGGAAAAAAACCCAGGGACCAACCCCCTTTATGGTTCCAAA 480 consensus_3903#1 TATAATCTACAAACTAAACAAGAAAAAAACA-AGGGACCAACCCATCATTTTCT------ 204 **** ************ * ********* ************ * * * consensus_3903#0 ACCGGAAGAACTTATGGCCGGGCCATGGGAATAAACCCCAAACCTTTGCCCAAAAAAACT 540 consensus_3903#1 GTCGGAAAAA-TCATG--CGGTCAATG--AATAGAC----AAACTATGC---GAAAAACT 252 ***** ** * *** *** * *** **** ** ** ** *** ******* consensus_3903#0 TTTATATTTTTCCCTTCCCCCAAATTTATGGGCCCCTTTTTTTTAACCCCCCAT---TTA 597 consensus_3903#1 TTA-----TTTTCCATCCC----AACTATCGTCCTTTTTTAACCACATCTACATCAATTC 303 ** *** ** **** * *** * ** **** * * *** ** consensus_3903#0 CCACTAAAATTTTCCCACCCCTTAAAAAAAGGGGAGGTGCCCCCCGGATATTAAAACGCC 657 consensus_3903#1 CAACCTTAATAATGATGTTCCTGATATAAAGCATACATAATTAGCTTGTTTTCTGTGATT 363 * ** *** * *** * * **** * * * * ** consensus_3903#0 CCCCCCCCCAATTACACCCTGTGTTTTCTCTGGGGAGAGGGGGCCAAAAACGCGGGTTTT 717 consensus_3903#1 GGCAATACTGTTTATAGATTGCAGACA-TATGAAAATAATTAGCGAAATAAATGAACTC- 421 * * *** * ** * ** * * ** *** * * * consensus_3903#0 ATAAAAAATGGCGCCCCCCCTTTTGCGAGAAAATAATTTTTTTCCCCCGGAAAAAAAAAG 777 consensus_3903#1 ------------------------------------------------------------ consensus_3903#0 AAAGGGCCCCCCCCCCCCCGCTTGTTTTTTTN 809 consensus_3903#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||