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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 3922 cluster # 3922       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3922#0 length = 582 sequences # 1  
consensus_3922#1 length = 340 sequences # 1  

consensusID : consensus_3922#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence
                              [AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGTGCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCAAGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAAAAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCTTTGTCATCAGGTGGCATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGAAAAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC]

[+] EMBL SMAA69314            [AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGTGCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCAAGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAAAAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCTTTGTCATCAGGTGGCATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGAAAAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC]


>consensus_3922#0 AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGT GCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCA AGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTT ATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAA AAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCTTTGTCATCAGGTGG CATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGAA AAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGTC TTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCT GAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGT CTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC



consensusID : consensus_3922#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence
                              [TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTGCATCTAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGGAAAAGTTTGGCGTTGGGGGCAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACGTGTGCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA]

[+] EMBL CD136115             [TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTGCATCTAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGGAAAAGTTTGGCGTTGGGGGCAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACGTGTGCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA]


>consensus_3922#1 TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTGCATC TAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGGAAAAG TTTGGCGTTGGGGGCAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGTCTTGGA GTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCA GATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCA CGTGTGCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3922#0      AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGT 60
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      GCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCA 120
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      AGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTT 180
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      ATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAA 240
consensus_3922#1      ------------------------------------------------------------
                                                                                  

consensus_3922#0      AAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCT-TTGTCATCAGGTG 299
consensus_3922#1      ----TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTG 56
                            **    *  *  * *** * *      * **  * ****   ************

consensus_3922#0      GCATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGA 359
consensus_3922#1      -CATCTAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGG 115
                       ********* *  * * ***** *********************************** 

consensus_3922#0      AAAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGT 419
consensus_3922#1      AAAAGTTTGGCGTTGGGGG-CAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGT 174
                      ******************* **************** ***********************

consensus_3922#0      CTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATC 479
consensus_3922#1      CTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATC 234
                      ************************************************************

consensus_3922#0      TGAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTG 539
consensus_3922#1      TGAGCAGATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTG 294
                      ************* *********** **********************************

consensus_3922#0      TCTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC---- 582
consensus_3922#1      TCTGCACGTGT-GCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA 340
                      ******* *** *********** *******************    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)