These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGTGCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCAAGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAAAAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCTTTGTCATCAGGTGGCATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGAAAAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC] [+] EMBL SMAA69314 [AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGTGCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCAAGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAAAAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCTTTGTCATCAGGTGGCATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGAAAAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC] consensusID : consensus_3922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTGCATCTAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGGAAAAGTTTGGCGTTGGGGGCAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACGTGTGCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA] [+] EMBL CD136115 [TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTGCATCTAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGGAAAAGTTTGGCGTTGGGGGCAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGTCTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATCTGAGCAGATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTGTCTGCACGTGTGCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3922#0 AAAATTCAGAAAGGACGTCAGGGGATAGTTGCTAAATTAGCGCAGGAATAAAACAAAAGT 60 consensus_3922#1 ------------------------------------------------------------ consensus_3922#0 GCTAATGACAACAGAGGCATCAAAAATACTTATCGGAAGAAAAATAAAAATAATTCAGCA 120 consensus_3922#1 ------------------------------------------------------------ consensus_3922#0 AGGACGTCAGGATATAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTT 180 consensus_3922#1 ------------------------------------------------------------ consensus_3922#0 ATCAGTTGCTAAATTAGTGCAGGAATTTAAAGAAAGTGCTAATGACTTATCGAAAAAAAA 240 consensus_3922#1 ------------------------------------------------------------ consensus_3922#0 AAACCAGTTCGAACATCGAATTAATAAACATGATGAAACTGTCTCT-TTGTCATCAGGTG 299 consensus_3922#1 ----TTGTCATCAGGTGCACTTAGTGACATCTGTAAAGGTTTCTCAACTGTCATCAGGTG 56 ** * * * *** * * * ** * **** ************ consensus_3922#0 GCATCTAGTGACATCTGTAAAGGTTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGA 359 consensus_3922#1 -CATCTAGTGCCTGCAGGAAAGGCTTCTTGGTTGCTGTCATTAGTCATTTCAGATATCGG 115 ********* * * * ***** *********************************** consensus_3922#0 AAAAGTTTGGCGTTGGGGGGCAGGGAGATAAAGGAGGAATGGGAATAGACTTGAGGTCGT 419 consensus_3922#1 AAAAGTTTGGCGTTGGGGG-CAGGGAGATAAAGGAGCAATGGGAATAGACTTGAGGTCGT 174 ******************* **************** *********************** consensus_3922#0 CTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATC 479 consensus_3922#1 CTTGGAGTCTGTACATCTGAACTGGAAGCAAACTAAATATGTCAATTGCGCCAGTGCATC 234 ************************************************************ consensus_3922#0 TGAGCAGATGTAGATTAGGGTGTCCATTGAGTCAGTGTACAATTCTGGGCTGTCATGGTG 539 consensus_3922#1 TGAGCAGATGTAGTTTAGGGTGTCCCTTGAGTCAGTGTACAATTCTGGGCTGTCATGGTG 294 ************* *********** ********************************** consensus_3922#0 TCTGCACATGTTGCTTCCGTTCAATATTCGTTCCTTAATAGCC---- 582 consensus_3922#1 TCTGCACGTGT-GCTTCCGTTCAGTATTCGTTCCTTAATAGCCTTCA 340 ******* *** *********** ******************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||