cluster # 3925

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Schistosoma mansoni
cluster # 3925 cluster # 3925 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3925#0 length = 381 sequences # 1

consensus_3925#1 length = 293 sequences # 1

consensusID : consensus_3925#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [ATCATTTGATTAAATATATGTGTAAGTGGAACAAAAACAAAAGAAAAGTGAAGCAATCATAAGTAATTTTGTGGAATATTTGAAACAAATAAATCAGAGACCCATATATTAACCTTTTGCAAAACACATTTAACGGGGGAGCATCAATAGTGCGAAAGGTGTAATAAATAAACTGACAGATGCTGACATCGACACTAACCTAGCCGTAATACCGCTTGTGTGCAAAAAAATATGTTGTAGCAAACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAGCGTATTGTGAAACCCGTCATTAACTACCTGACATACGCACTTAACATTATTGATCTAACAATAACTGAACAAACAAATACTGTGTA]

[+] EMBL CD178794             [ATCATTTGATTAAATATATGTGTAAGTGGAACAAAAACAAAAGAAAAGTGAAGCAATCATAAGTAATTTTGTGGAATATTTGAAACAAATAAATCAGAGACCCATATATTAACCTTTTGCAAAACACATTTAACGGGGGAGCATCAATAGTGCGAAAGGTGTAATAAATAAACTGACAGATGCTGACATCGACACTAACCTAGCCGTAATACCGCTTGTGTGCAAAAAAATATGTTGTAGCAAACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAGCGTATTGTGAAACCCGTCATTAACTACCTGACATACGCACTTAACATTATTGATCTAACAATAACTGAACAAACAAATACTGTGTA]




>consensus_3925#0
ATCATTTGATTAAATATATGTGTAAGTGGAACAAAAACAAAAGAAAAGTGAAGCAATCAT
AAGTAATTTTGTGGAATATTTGAAACAAATAAATCAGAGACCCATATATTAACCTTTTGC
AAAACACATTTAACGGGGGAGCATCAATAGTGCGAAAGGTGTAATAAATAAACTGACAGA
TGCTGACATCGACACTAACCTAGCCGTAATACCGCTTGTGTGCAAAAAAATATGTTGTAG
CAAACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAGCGTAT
TGTGAAACCCGTCATTAACTACCTGACATACGCACTTAACATTATTGATCTAACAATAAC
TGAACAAACAAATACTGTGTA

consensusID : consensus_3925#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [TAGTACCGCTTGTGTGCAGAAAAATATGTTGTAGCAGACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAACGTATTGGGAAACCTGTCAATAAATAACTGACAAACGCACTAAACATTATTGATCGGAACAATAACTAAACACAACACAAAATGTGTATAATGGCANNNNNNGCGCGTGTAGCAATACTCTTGCATTAAAATAACAGCAAATATGCCCATTATTGTGAGTGCAGGCACTAAACCACAAATGTGATTATAATCATTTCTCTATTA]

[-] EMBL CD183470             [TAGTACCGCTTGTGTGCAGAAAAATATGTTGTAGCAGACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAACGTATTGGGAAACCTGTCAATAAATAACTGACAAACGCACTAAACATTATTGATCGGAACAATAACTAAACACAACACAAAATGTGTATAATGGCANNNNNNGCGCGTGTAGCAATACTCTTGCATTAAAATAACAGCAAATATGCCCATTATTGTGAGTGCAGGCACTAAACCACAAATGTGATTATAATCATTTCTCTATTA]




>consensus_3925#1
TAGTACCGCTTGTGTGCAGAAAAATATGTTGTAGCAGACTGAATAAACCAGCCATGGCAC
TTGAAATACCATTCAATGTGCCGAAATAACGTATTGGGAAACCTGTCAATAAATAACTGA
CAAACGCACTAAACATTATTGATCGGAACAATAACTAAACACAACACAAAATGTGTATAA
TGGCANNNNNNGCGCGTGTAGCAATACTCTTGCATTAAAATAACAGCAAATATGCCCATT
ATTGTGAGTGCAGGCACTAAACCACAAATGTGATTATAATCATTTCTCTATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3925#0      ATCATTTGATTAAATATATGTGTAAGTGGAACAAAAACAAAAGAAAAGTGAAGCAATCAT 60
consensus_3925#1      ---------------------------------------TAGTACCGCTTGTGTGCAGAA 21
                                                              *  *    *   *     * 

consensus_3925#0      AAGTAATTTTGTGGAATATTTGAAACAAATAAATCAGAGACCCATATATTAACCTTTTGC 120
consensus_3925#1      AAATA-TGTTGTAGCAGACT--GAATAAACCAGCCATGGCACTTGAAAT--ACCATTCAA 76
                      ** ** * **** * * * *   ** ***  *  **  *  *   * **  *** **   

consensus_3925#0      AAAACACATTTAACGGGGGAGCATCAATAGTGCGAAAGGTGTAATAAATAAACTGACAGA 180
consensus_3925#1      TGTGCCGAAATAACGTATTGGGAAACCTGTCAATAAATAACTGACAAACGCACTAAACAT 136
                          *  *  *****     * *    *      ***    * * ***   *** *    

consensus_3925#0      TGCTGACATCGACACTAACCTAGCCGTAATACCGCTTGTGTGCAAAAAAATATGTTGTAG 240
consensus_3925#1      TATTGATCGGAACAATAAC-TAAACACAACACAAAATGTGTATAATGGCANNNNNNGCG- 194
                      *  ***     *** **** **  *  ** **    *****  **    *      *   

consensus_3925#0      CAAACTGAATAAACCAGCCATGGCACTTGAAATACCATTCAATGTGCCGAAATAGCGTAT 300
consensus_3925#1      -----CGTGTAGCAATACTCTTGCA-TTAAAATAACAGCAAATATGCCCAT------TAT 242
                            *  **      *  * *** ** ***** **   *** **** *       ***

consensus_3925#0      TGTGAAACCCGTCATTAACTACCTGACATACGCACTTAACATTATTGATCTAACAATAAC 360
consensus_3925#1      TGTGAGTGCAGGCACTAA--ACC--ACAAATGTGATTATAATCATTTCTCTATTA----- 293
                      *****   * * ** ***  ***  *** * *   ***  ** ***  ****  *     

consensus_3925#0      TGAACAAACAAATACTGTGTA 381
consensus_3925#1      ---------------------