cluster # 393

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Schistosoma mansoni
cluster # 393 cluster # 393 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_393#0 length = 427 sequences # 1

consensus_393#1 length = 367 sequences # 1

consensusID : consensus_393#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [CCACTATTCACGGCTCGGTCGTACACCGACACGCTCATGCAATCGTGACTGCTCTAGGATTGTGCTGTGGATGTCATGCAAGCGCGTCACAGTCCAGATTGCTATCTGAAGCTAATGCAATGGACACGATCCCTGATGCAACCTGTTCTACCACTTCACTTTCTGCGTCCGTTTCAATTTGCCCCTATGTTTCACCGAACACTTCGACTGCCGACTCGGGTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTGCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTACTGCGTCCGTTTCAACTTGCGC]

[+] EMBL CD166537             [CCACTATTCACGGCTCGGTCGTACACCGACACGCTCATGCAATCGTGACTGCTCTAGGATTGTGCTGTGGATGTCATGCAAGCGCGTCACAGTCCAGATTGCTATCTGAAGCTAATGCAATGGACACGATCCCTGATGCAACCTGTTCTACCACTTCACTTTCTGCGTCCGTTTCAATTTGCCCCTATGTTTCACCGAACACTTCGACTGCCGACTCGGGTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTGCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTACTGCGTCCGTTTCAACTTGCGC]




>consensus_393#0
CCACTATTCACGGCTCGGTCGTACACCGACACGCTCATGCAATCGTGACTGCTCTAGGAT
TGTGCTGTGGATGTCATGCAAGCGCGTCACAGTCCAGATTGCTATCTGAAGCTAATGCAA
TGGACACGATCCCTGATGCAACCTGTTCTACCACTTCACTTTCTGCGTCCGTTTCAATTT
GCCCCTATGTTTCACCGAACACTTCGACTGCCGACTCGGGTTCCGTCTCACCTTCAAATA
CGCCTTCACCAACTTCACCATATTGCGCCTCCATCTCACCGACACGCTCAACCAATCGTT
CCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGA
ACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTACTGCGTCCGTTTCAA
CTTGCGC

consensusID : consensus_393#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [GCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACGCAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAGGCACAGATTGCAGTCAGGCACAGATTGCAGTCGAGGCACAGATTGCAGTCAGGCACAGATTGCAGTCGGGCACAGATTGC]

[+] EMBL CD200466             [GCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACGCAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAGGCACAGATTGCAGTCAGGCACAGATTGCAGTCGAGGCACAGATTGCAGTCAGGCACAGATTGCAGTCGGGCACAGATTGC]




>consensus_393#1
GCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACGCAGACACACGTTCC
GATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCA
CCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACT
TCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGT
GCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAGGCACAGATTGCAG
TCAGGCACAGATTGCAGTCGAGGCACAGATTGCAGTCAGGCACAGATTGCAGTCGGGCAC
AGATTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_393#0      CCACTATTCACGGCTCGGTCGTACACCGACACGCTCATGCAATCGTGACTGCTCTAGGAT 60
consensus_393#1      ------------------------------------------------------------
                                                                                 

consensus_393#0      TGTGCTGTGGATGTCATGCAAGCGCGTCACAGTCCAGATTGCTATCTGAAGCTAATGCAA 120
consensus_393#1      --------GCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGA---CTGGAGCGAACGCA- 48
                             * *     ********* *** * ****  * *    *** *** ** *** 

consensus_393#0      TGGACACGATCCCTGATGCAACCTGTTCTACCACTTCACTTTCTGCGTCCGTTTCAATTT 180
consensus_393#1      --GACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTT 106
                       *****     * *** ********************************* ***** **

consensus_393#0      GCCCCTATGTTTCACCGAACACTTCGACTGCCGACTCGGGTTCCGTCTCACCTTCAAATA 240
consensus_393#1      GCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATA 166
                     ***** **** **************************** ********************

consensus_393#0      CGCCTTCACCAACTTCACCATATTGCGCCTCCATCTCACCGACACGCTCAACCAATCGTT 300
consensus_393#1      CGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTT 226
                     ************************ ***********************************

consensus_393#0      CCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGA 360
consensus_393#1      CCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGA 286
                     ************************************************************

consensus_393#0      A-CACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTACTGC-GTCCGTTTC 418
consensus_393#1      GGCACAGAT-TGCAGTCAGGCACAGATTG--CAGTCGAGGCACAGATTGCAGTCAGGCAC 343
                       ******    *  ** *   **   **  *   *    ***  * *** *** *   *

consensus_393#0      AACTTGCGC--------------- 427
consensus_393#1      AGATTGCAGTCGGGCACAGATTGC 367
                     *  ****