These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3978#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [TCTTTATTTTAATGCATTGAGTGCTTGACAAGATTGAAGATAAAAAACAATATATCAGATGATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTATTTGTTTGTCTTTTTCTGGTTGGGAATATGAAAACGAAAGGGTGTTAATAAATTAAAACTACAATAAAATAGAACTTATTTCATAAACAGAGTTTTTTAATGAGCATTAAAGGAAGATTTATTTGGTTGAGTGAAATAGCCGTCAGTTTTGGATATAGAATAAGGGATTAGAAGGAAACACAACTGATCTAAACACATTGTTCAAA] [+] EMBL CD073768 [TCTTTATTTTAATGCATTGAGTGCTTGACAAGATTGAAGATAAAAAACAATATATCAGATGATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTATTTGTTTGTCTTTTTCTGGTTGGGAATATGAAAACGAAAGGGTGTTAATAAATTAAAACTACAATAAAATAGAACTTATTTCATAAACAGAGTTTTTTAATGAGCATTAAAGGAAGATTTATTTGGTTGAGTGAAATAGCCGTCAGTTTTGGATATAGAATAAGGGATTAGAAGGAAACACAACTGATCTAAACACATTGTTCAAA] consensusID : consensus_3978#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [CTTTATTTTAATGCATTGAGTTDDGACAAGATTGAAGATAAAAAACAATATATCAGATGATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTAATTGGTTGGCCTTTTATGGTTGGGAATATGGAAACGAAGGGTGTTAATAAATTAAACTACATTAAATAAGACTTTTTTCATAAACAGGGTTTTTAATGGGCTTAAAGGAG] [+] EMBL AW053266 [CTTTATTTTAATGCATTGAGTTDDGACAAGATTGAAGATAAAAAACAATATATCAGATGATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTAATTGGTTGGCCTTTTATGGTTGGGAATATGGAAACGAAGGGTGTTAATAAATTAAACTACATTAAATAAGACTTTTTTCATAAACAGGGTTTTTAATGGGCTTAAAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3978#0 TCTTTATTTTAATGCATTGAGTGCTTGACAAGATTGAAGATAAAAAACAATATATCAGAT 60 consensus_3978#1 -CTTTATTTTAATGCATTGAGT-TDDGACAAGATTGAAGATAAAAAACAATATATCAGAT 58 ********************* ********************************** consensus_3978#0 GATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTATTTGTTTGTCTTTTTC 120 consensus_3978#1 GATCTGTAATAATAATGCATAGAAACTAAATTTCAACTAATTTAATTGGTTGGCCTTTTA 118 ******************************************** *** *** * **** consensus_3978#0 TGGTTGGGAATATGAAAACGAAAGGGTGTTAATAAATTAAAACTACAATAAAATAGAACT 180 consensus_3978#1 TGGTTGGGAATATGGAAACGAA-GGGTGTTAATAAATTAAA-CTACATTAAA-TAAGACT 175 ************** ******* ****************** ***** **** ** *** consensus_3978#0 TATTTCATAAACAGAGTTTTTTAATGAGCATTAAAGGAAGATTTATTTGGTTGAGTGAAA 240 consensus_3978#1 TTTTTCATAAACAGGGTTTTT-AATGGGC-TTAAAGGAG--------------------- 212 * ************ ****** **** ** ******** consensus_3978#0 TAGCCGTCAGTTTTGGATATAGAATAAGGGATTAGAAGGAAACACAACTGATCTAAACAC 300 consensus_3978#1 ------------------------------------------------------------ consensus_3978#0 ATTGTTCAAA 310 consensus_3978#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||