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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 398 cluster # 398       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_398#0 length = 584 sequences # 1  
consensus_398#1 length = 357 sequences # 1  

consensusID : consensus_398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence
                              [AATTGTATTCAAAATAACAATCGTAAATGAACAGCAATTACTGATTTGAATAACGTTCATATATTTATAGTATATACATAAGAAGCTTCTAGATTTCTCTCCAATAATATGCCCGGGCTGATTAGTTTAGAATTAGCCAATCAGCGCGCAGCAACACCATCATGCATGAAACATGCTTTAATCCAATCTATGTCCCACTAACAATTAGTTACACATAAGTAATGTAGAACATAATCTTGTCCTATCTCACATCATTTGAGGATTTAGTCATTCCACATTGCATATCCAAACATCTGAAACTCAGTCAGTCAGTCAGCTACAACGTAGGACCAGGCACATTTATGCATCGGTCCAAGTTGTCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAATAGTTAATTTAGTGGTGATAGTATATAAAAGATAGATTGTAAATAAGGATATAGTATAGGAAGGGAGAAAGTTATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCGACGCCATTGTGAGCCATTCTGAGCCATGTCACCTAGAGTCTCCAACCACTGGTT]

[+] EMBL CD073149             [AATTGTATTCAAAATAACAATCGTAAATGAACAGCAATTACTGATTTGAATAACGTTCATATATTTATAGTATATACATAAGAAGCTTCTAGATTTCTCTCCAATAATATGCCCGGGCTGATTAGTTTAGAATTAGCCAATCAGCGCGCAGCAACACCATCATGCATGAAACATGCTTTAATCCAATCTATGTCCCACTAACAATTAGTTACACATAAGTAATGTAGAACATAATCTTGTCCTATCTCACATCATTTGAGGATTTAGTCATTCCACATTGCATATCCAAACATCTGAAACTCAGTCAGTCAGTCAGCTACAACGTAGGACCAGGCACATTTATGCATCGGTCCAAGTTGTCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAATAGTTAATTTAGTGGTGATAGTATATAAAAGATAGATTGTAAATAAGGATATAGTATAGGAAGGGAGAAAGTTATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCGACGCCATTGTGAGCCATTCTGAGCCATGTCACCTAGAGTCTCCAACCACTGGTT]


>consensus_398#0 AATTGTATTCAAAATAACAATCGTAAATGAACAGCAATTACTGATTTGAATAACGTTCAT ATATTTATAGTATATACATAAGAAGCTTCTAGATTTCTCTCCAATAATATGCCCGGGCTG ATTAGTTTAGAATTAGCCAATCAGCGCGCAGCAACACCATCATGCATGAAACATGCTTTA ATCCAATCTATGTCCCACTAACAATTAGTTACACATAAGTAATGTAGAACATAATCTTGT CCTATCTCACATCATTTGAGGATTTAGTCATTCCACATTGCATATCCAAACATCTGAAAC TCAGTCAGTCAGTCAGCTACAACGTAGGACCAGGCACATTTATGCATCGGTCCAAGTTGT CATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAATAGTTAATTTAGTGGT GATAGTATATAAAAGATAGATTGTAAATAAGGATATAGTATAGGAAGGGAGAAAGTTATG AAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCGACGCCATTGT GAGCCATTCTGAGCCATGTCACCTAGAGTCTCCAACCACTGGTT



consensusID : consensus_398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 357
fasta sequence
                              [GGATATAGTATAGGAAGAAAGAAAATTATTAAGCAATTGTAATCTTAAGGTTTGAGGGAAGATTAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCTAGAGTCTCCAACCATTGGTTACGATAGTCACGCGGACCCCAACCAGGTAGTCTGCACCTGCCAACATGGCTCAGATTAGAAGTTAGTGATGCAAAACTGTACACAACAGACTACACTTTAGGACTTTTTACAGAAATAAAGACATTACTGAACTTTGTAGCAATACATTTCCGAGTGTTCGTACAGTGTGAAATCAATGAATCTATCAAATATTTTACTAAACAAGAAAGCTATAATAAACAT]

[+] EMBL CD127824             [GGATATAGTATAGGAAGAAAGAAAATTATTAAGCAATTGTAATCTTAAGGTTTGAGGGAAGATTAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCTAGAGTCTCCAACCATTGGTTACGATAGTCACGCGGACCCCAACCAGGTAGTCTGCACCTGCCAACATGGCTCAGATTAGAAGTTAGTGATGCAAAACTGTACACAACAGACTACACTTTAGGACTTTTTACAGAAATAAAGACATTACTGAACTTTGTAGCAATACATTTCCGAGTGTTCGTACAGTGTGAAATCAATGAATCTATCAAATATTTTACTAAACAAGAAAGCTATAATAAACAT]


>consensus_398#1 GGATATAGTATAGGAAGAAAGAAAATTATTAAGCAATTGTAATCTTAAGGTTTGAGGGAA GATTAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCTAGAGTC TCCAACCATTGGTTACGATAGTCACGCGGACCCCAACCAGGTAGTCTGCACCTGCCAACA TGGCTCAGATTAGAAGTTAGTGATGCAAAACTGTACACAACAGACTACACTTTAGGACTT TTTACAGAAATAAAGACATTACTGAACTTTGTAGCAATACATTTCCGAGTGTTCGTACAG TGTGAAATCAATGAATCTATCAAATATTTTACTAAACAAGAAAGCTATAATAAACAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_398#0      AATTGTATTCAAAATAACAATCGTAAATGAACAGCAATTACTGATTTGAATAACGTTCAT 60
consensus_398#1      ------------------------------------------------------------
                                                                                 

consensus_398#0      ATATTTATAGTATATA-CATAAGAAGCTTCTAGATTTCTCTCCAATAATATGCCCGGGCT 119
consensus_398#1      ---------GGATATAGTATAGGAAGAAAGAAAATTATTAAGCAATTGTAATCTTAAGGT 51
                              * *****  *** ****     * ***  *   ****  **  *    * *

consensus_398#0      GATTAGTTTAGAATTAGCCAATCAGCGCGCAGCAACACCATCATGCATGAAACATGCTTT 179
consensus_398#1      --TTGAGGGAAGATTA---AGAGTGTATACACCTACGCCATTGTG-ATCGATTCTGAGCC 105
                       **     *  ****   *    *    ** * ** ****  ** **  *   **    

consensus_398#0      AATCCAATCTATGTCCCACTAACAATTAGTTACACATAAGTAATGTAGAACATAATC--- 236
consensus_398#1      ATGTCACCTAGAGTCT--CCAACCATTGGTTACG-ATA-GTCACGCGGACCCCAACCAGG 161
                     *   **      ***   * *** *** *****  *** ** * *  ** *  ** *   

consensus_398#0      TTGTCC-TATCTCACATCATTTGAGGATTTAGTCATTCCACATTGCATATCCAAACATCT 295
consensus_398#1      TAGTCTGCACCTGCCAACATGGCTCAGATTAGAAGTTA-GTGATGCAAAACTGTACACAA 220
                     * ***   * **  ** ***        ****   **      **** * *   ***   

consensus_398#0      GAAACTCAGTCAGTCAGTCAGCTACAACGTAGGACCAGGCACATTTATGCATCGGTCCAA 355
consensus_398#1      CAGACTA---CACTTTAGGACTTTTTACAGAAATAAAGACATTACTGAACTTTGTAGCAA 277
                      * ***    ** *     *  *   **  *     ** **    *   * * *   ***

consensus_398#0      GTTGTCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAATAGTTAATTTA 415
consensus_398#1      TACATTTCCGAGTGTTCGTACAGTGTGA-AATCAATGAATCTATC-AAATATTTTACTAA 335
                         *        *** * ***    **  * **  * **  **  ***** ** * * *

consensus_398#0      GTGGTGATAGTATATAAAAGATAGATTGTAAATAAGGATATAGTATAGGAAGGGAGAAAG 475
consensus_398#1      ACAAGAAAGCTATAATAAACAT-------------------------------------- 357
                           *   ****  *** **                                      

consensus_398#0      TTATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCGACGCC 535
consensus_398#1      ------------------------------------------------------------
                                                                                 

consensus_398#0      ATTGTGAGCCATTCTGAGCCATGTCACCTAGAGTCTCCAACCACTGGTT 584
consensus_398#1      -------------------------------------------------
                                                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)