These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [AATTGTATTCAAAATAACAATCGTAAATGAACAGCAATTACTGATTTGAATAACGTTCATATATTTATAGTATATACATAAGAAGCTTCTAGATTTCTCTCCAATAATATGCCCGGGCTGATTAGTTTAGAATTAGCCAATCAGCGCGCAGCAACACCATCATGCATGAAACATGCTTTAATCCAATCTATGTCCCACTAACAATTAGTTACACATAAGTAATGTAGAACATAATCTTGTCCTATCTCACATCATTTGAGGATTTAGTCATTCCACATTGCATATCCAAACATCTGAAACTCAGTCAGTCAGTCAGCTACAACGTAGGACCAGGCACATTTATGCATCGGTCCAAGTTGTCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAATAGTTAATTTAGTGGTGATAGTATATAAAAGATAGATTGTAAATAAGGATATAGTATAGGAAGGGAGAAAGTTATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCGACGCCATTGTGAGCCATTCTGAGCCATGTCACCTAGAGTCTCCAACCACTGGTT] [+] EMBL CD073149 [AATTGTATTCAAAATAACAATCGTAAATGAACAGCAATTACTGATTTGAATAACGTTCATATATTTATAGTATATACATAAGAAGCTTCTAGATTTCTCTCCAATAATATGCCCGGGCTGATTAGTTTAGAATTAGCCAATCAGCGCGCAGCAACACCATCATGCATGAAACATGCTTTAATCCAATCTATGTCCCACTAACAATTAGTTACACATAAGTAATGTAGAACATAATCTTGTCCTATCTCACATCATTTGAGGATTTAGTCATTCCACATTGCATATCCAAACATCTGAAACTCAGTCAGTCAGTCAGCTACAACGTAGGACCAGGCACATTTATGCATCGGTCCAAGTTGTCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAATAGTTAATTTAGTGGTGATAGTATATAAAAGATAGATTGTAAATAAGGATATAGTATAGGAAGGGAGAAAGTTATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCGACGCCATTGTGAGCCATTCTGAGCCATGTCACCTAGAGTCTCCAACCACTGGTT] consensusID : consensus_398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [GGATATAGTATAGGAAGAAAGAAAATTATTAAGCAATTGTAATCTTAAGGTTTGAGGGAAGATTAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCTAGAGTCTCCAACCATTGGTTACGATAGTCACGCGGACCCCAACCAGGTAGTCTGCACCTGCCAACATGGCTCAGATTAGAAGTTAGTGATGCAAAACTGTACACAACAGACTACACTTTAGGACTTTTTACAGAAATAAAGACATTACTGAACTTTGTAGCAATACATTTCCGAGTGTTCGTACAGTGTGAAATCAATGAATCTATCAAATATTTTACTAAACAAGAAAGCTATAATAAACAT] [+] EMBL CD127824 [GGATATAGTATAGGAAGAAAGAAAATTATTAAGCAATTGTAATCTTAAGGTTTGAGGGAAGATTAAGAGTGTATACACCTACGCCATTGTGATCGATTCTGAGCCATGTCACCTAGAGTCTCCAACCATTGGTTACGATAGTCACGCGGACCCCAACCAGGTAGTCTGCACCTGCCAACATGGCTCAGATTAGAAGTTAGTGATGCAAAACTGTACACAACAGACTACACTTTAGGACTTTTTACAGAAATAAAGACATTACTGAACTTTGTAGCAATACATTTCCGAGTGTTCGTACAGTGTGAAATCAATGAATCTATCAAATATTTTACTAAACAAGAAAGCTATAATAAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_398#0 AATTGTATTCAAAATAACAATCGTAAATGAACAGCAATTACTGATTTGAATAACGTTCAT 60 consensus_398#1 ------------------------------------------------------------ consensus_398#0 ATATTTATAGTATATA-CATAAGAAGCTTCTAGATTTCTCTCCAATAATATGCCCGGGCT 119 consensus_398#1 ---------GGATATAGTATAGGAAGAAAGAAAATTATTAAGCAATTGTAATCTTAAGGT 51 * ***** *** **** * *** * **** ** * * * consensus_398#0 GATTAGTTTAGAATTAGCCAATCAGCGCGCAGCAACACCATCATGCATGAAACATGCTTT 179 consensus_398#1 --TTGAGGGAAGATTA---AGAGTGTATACACCTACGCCATTGTG-ATCGATTCTGAGCC 105 ** * **** * * ** * ** **** ** ** * ** consensus_398#0 AATCCAATCTATGTCCCACTAACAATTAGTTACACATAAGTAATGTAGAACATAATC--- 236 consensus_398#1 ATGTCACCTAGAGTCT--CCAACCATTGGTTACG-ATA-GTCACGCGGACCCCAACCAGG 161 * ** *** * *** *** ***** *** ** * * ** * ** * consensus_398#0 TTGTCC-TATCTCACATCATTTGAGGATTTAGTCATTCCACATTGCATATCCAAACATCT 295 consensus_398#1 TAGTCTGCACCTGCCAACATGGCTCAGATTAGAAGTTA-GTGATGCAAAACTGTACACAA 220 * *** * ** ** *** **** ** **** * * *** consensus_398#0 GAAACTCAGTCAGTCAGTCAGCTACAACGTAGGACCAGGCACATTTATGCATCGGTCCAA 355 consensus_398#1 CAGACTA---CACTTTAGGACTTTTTACAGAAATAAAGACATTACTGAACTTTGTAGCAA 277 * *** ** * * * ** * ** ** * * * * *** consensus_398#0 GTTGTCATACCTCGTTAGCACAACAAGATGAACACCGGATTCATAGAAATAGTTAATTTA 415 consensus_398#1 TACATTTCCGAGTGTTCGTACAGTGTGA-AATCAATGAATCTATC-AAATATTTTACTAA 335 * *** * *** ** * ** * ** ** ***** ** * * * consensus_398#0 GTGGTGATAGTATATAAAAGATAGATTGTAAATAAGGATATAGTATAGGAAGGGAGAAAG 475 consensus_398#1 ACAAGAAAGCTATAATAAACAT-------------------------------------- 357 * **** *** ** consensus_398#0 TTATGAAGCAATTTTAATCTCAAGGTTTAAGGGAAGATAAAGAGTGTATACACCGACGCC 535 consensus_398#1 ------------------------------------------------------------ consensus_398#0 ATTGTGAGCCATTCTGAGCCATGTCACCTAGAGTCTCCAACCACTGGTT 584 consensus_398#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||