These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [CTTTATTTTGTTCAATAACCTCTTTAAGAACCAACAAACAATTAGATTGTCGGTGTTTTACTTTTATAGCTCTACCATATGATCCACTTCCAATTTCTCCCAATATTTCTAAATCTTTCTCGTCTATATTTGGAGGAAACTCTACCGTGGACCTAACACTAGTCGTTCGAGTCAATGAAACACGCTCACATTCTTCTTGAATGGTGCATTGAGCGTTTGAACGTGAAAATCTACAACCACGATCCTTGCTATCATTTCGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCATCCCTTAGTTTGTGAAATTTCCAGGCTCCTGTCA] [+] EMBL CD179426 [CTTTATTTTGTTCAATAACCTCTTTAAGAACCAACAAACAATTAGATTGTCGGTGTTTTACTTTTATAGCTCTACCATATGATCCACTTCCAATTTCTCCCAATATTTCTAAATCTTTCTCGTCTATATTTGGAGGAAACTCTACCGTGGACCTAACACTAGTCGTTCGAGTCAATGAAACACGCTCACATTCTTCTTGAATGGTGCATTGAGCGTTTGAACGTGAAAATCTACAACCACGATCCTTGCTATCATTTCGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCATCCCTTAGTTTGTGAAATTTCCAGGCTCCTGTCA] consensusID : consensus_4000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [TGAGAACTCAGTACTGTGACCTAACACTAGTCGTTCAGTGCAATGAACACGCTCACATTCTTCTTGAATGGTCGGATTGACTAGGTTTGAACGTGAAAATCTACAACCACGATCCTTCGTATCGATTTCGGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCATCCCTTAGTTTGTGAAATTTCCAGGCTCCGTCGAAGAAGTATAATAGAGGCTTTCAGATACCTGT] [-] EMBL AA917148 [TGAGAACTCAGTACTGTGACCTAACACTAGTCGTTCAGTGCAATGAACACGCTCACATTCTTCTTGAATGGTCGGATTGACTAGGTTTGAACGTGAAAATCTACAACCACGATCCTTCGTATCGATTTCGGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCATCCCTTAGTTTGTGAAATTTCCAGGCTCCGTCGAAGAAGTATAATAGAGGCTTTCAGATACCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4000#0 CTTTATTTTGTTCAATAACCTCTTTAAGAACCAACAAACAATTAGATTGTCGGTGTTTTA 60 consensus_4000#1 ------------------------------------------------------------ consensus_4000#0 CTTTTATAGCTCTACCATATGATCCACTTCCAATTTCTCCCAATATTTCTAAATCTTTCT 120 consensus_4000#1 ------------------------------------------------------------ consensus_4000#0 CGTCTATATTTGGAGGAAACTCTACCGTGGACCTAACACTAGTCGTTCGAGTCAATGAAA 180 consensus_4000#1 -----------TGAGAACTCAGTACTGTG-ACCTAACACTAGTCGTTCAGTGCAATGAA- 47 *** * * *** *** ****************** ******* consensus_4000#0 CACGCTCACATTCTTCTTGAATGGT-GCATTGAGC--GTTTGAACGTGAAAATCTACAAC 237 consensus_4000#1 CACGCTCACATTCTTCTTGAATGGTCGGATTGACTAGGTTTGAACGTGAAAATCTACAAC 107 ************************* * ***** *********************** consensus_4000#0 CACGATCCTTGCTATC-ATTTCG-TAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCAT 295 consensus_4000#1 CACGATCCTTCGTATCGATTTCGGTAAAGATGTACTAGTGTGAAGTTTTTTTGTTATCAT 167 ********** **** ****** ************************************ consensus_4000#0 CCCTTAGTTTGTGAAATTTCCAGGCTCCTGTCA--------------------------- 328 consensus_4000#1 CCCTTAGTTTGTGAAATTTCCAGGCTCC-GTCGAAGAAGTATAATAGAGGCTTTCAGATA 226 **************************** *** consensus_4000#0 ----- consensus_4000#1 CCTGT 231 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||