cluster # 4080

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Schistosoma mansoni
cluster # 4080 cluster # 4080 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4080#0 length = 516 sequences # 1

consensus_4080#1 length = 239 sequences # 1

consensusID : consensus_4080#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CACTACATCCTAAATCTTCGTTTTTTTCGGTACGAAGTAATCGGCTCCAATGTCTGATGACCACTCAAATCAACTCTCACGACTATTTTACCCTATAAATGAACGTGTCGGCTTGTCGATTGGTGTTATATCTGGACACCAAAGCAAGCACAAACGGAAACATTTAGTTTTTACAATTTCACTAACTAAACCTACGAGCATTCAGGTCTATCTCGTCAAGATTACGGATAAAAACGAAATTAAGAAGGTGCAAGTATGCAACGCGAAAAATCTGAAAAAAATTGACTGCAGAGATACAAAAACTCAACCTAGCTATGAATTGCAGATAATTACGGAAAATAAGATATGGGTATTTAATGCTTTAAAATTAGAAGAAAAAAGACATTTTATCAGTTCATTTTGTCGTACACTTGCAACACTTCTACCACATGTAATCAAAGATATAGAATTAGTCAATTTCCCACAAGATAAAATTTCTCCACTTAGCCAAAATGAAACATTGGATGCTTTGCTTAA]

[+] EMBL CD154695             [CACTACATCCTAAATCTTCGTTTTTTTCGGTACGAAGTAATCGGCTCCAATGTCTGATGACCACTCAAATCAACTCTCACGACTATTTTACCCTATAAATGAACGTGTCGGCTTGTCGATTGGTGTTATATCTGGACACCAAAGCAAGCACAAACGGAAACATTTAGTTTTTACAATTTCACTAACTAAACCTACGAGCATTCAGGTCTATCTCGTCAAGATTACGGATAAAAACGAAATTAAGAAGGTGCAAGTATGCAACGCGAAAAATCTGAAAAAAATTGACTGCAGAGATACAAAAACTCAACCTAGCTATGAATTGCAGATAATTACGGAAAATAAGATATGGGTATTTAATGCTTTAAAATTAGAAGAAAAAAGACATTTTATCAGTTCATTTTGTCGTACACTTGCAACACTTCTACCACATGTAATCAAAGATATAGAATTAGTCAATTTCCCACAAGATAAAATTTCTCCACTTAGCCAAAATGAAACATTGGATGCTTTGCTTAA]




>consensus_4080#0
CACTACATCCTAAATCTTCGTTTTTTTCGGTACGAAGTAATCGGCTCCAATGTCTGATGA
CCACTCAAATCAACTCTCACGACTATTTTACCCTATAAATGAACGTGTCGGCTTGTCGAT
TGGTGTTATATCTGGACACCAAAGCAAGCACAAACGGAAACATTTAGTTTTTACAATTTC
ACTAACTAAACCTACGAGCATTCAGGTCTATCTCGTCAAGATTACGGATAAAAACGAAAT
TAAGAAGGTGCAAGTATGCAACGCGAAAAATCTGAAAAAAATTGACTGCAGAGATACAAA
AACTCAACCTAGCTATGAATTGCAGATAATTACGGAAAATAAGATATGGGTATTTAATGC
TTTAAAATTAGAAGAAAAAAGACATTTTATCAGTTCATTTTGTCGTACACTTGCAACACT
TCTACCACATGTAATCAAAGATATAGAATTAGTCAATTTCCCACAAGATAAAATTTCTCC
ACTTAGCCAAAATGAAACATTGGATGCTTTGCTTAA

consensusID : consensus_4080#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence

                              [ACTTCGTACCGAAAAAAACGAAGATTTAGGATGTAGTGGTTTGCGTGTGGCCGGAAGGTATTTATAAACTAGGGGAGCATTCAGAGTAGCGTAGGCACGGAGGGATTTAGTGACAAATGCAATCAACAACAATGAGAAACAACACAAGCCACAGATAAAACAATCTTGGAACCGAAACCAGAAGTATACAGTTCTAATGCGCTACACTACTAATAAGTTTGGCGCTACGCAACGCAAAC]

[+] EMBL CD159210             [ACTTCGTACCGAAAAAAACGAAGATTTAGGATGTAGTGGTTTGCGTGTGGCCGGAAGGTATTTATAAACTAGGGGAGCATTCAGAGTAGCGTAGGCACGGAGGGATTTAGTGACAAATGCAATCAACAACAATGAGAAACAACACAAGCCACAGATAAAACAATCTTGGAACCGAAACCAGAAGTATACAGTTCTAATGCGCTACACTACTAATAAGTTTGGCGCTACGCAACGCAAAC]




>consensus_4080#1
ACTTCGTACCGAAAAAAACGAAGATTTAGGATGTAGTGGTTTGCGTGTGGCCGGAAGGTA
TTTATAAACTAGGGGAGCATTCAGAGTAGCGTAGGCACGGAGGGATTTAGTGACAAATGC
AATCAACAACAATGAGAAACAACACAAGCCACAGATAAAACAATCTTGGAACCGAAACCA
GAAGTATACAGTTCTAATGCGCTACACTACTAATAAGTTTGGCGCTACGCAACGCAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4080#0      CACTACATCCTAAATCTTCGTTTTTTTCGGTACGAAGTAATCGGCTCCAATGTCTGATGA 60
consensus_4080#1      --------------ACTTCGTACCGAAAAAAACGAAGATTTAGGATGTAGTGGTTTGCGT 46
                                     ******          ******   * ** *  * **  *   * 

consensus_4080#0      CCACTCAAATCAACTCTCACGACTATTTTACCCTATAAATGAACGTGTCGGCTTGTCGAT 120
consensus_4080#1      GTGGCCGGAAGGTATTTATAAACTAGGGGAGCATTCAGAGTAGCGTAGGCACGGAGGGAT 106
                           *  *     * *    ****    * * *  * *  * ***     *     ***

consensus_4080#0      T-GGTGTTATATCTGGACACCAA-AGCAAGCACAAACGGAAACATTTAGTTTTTACAATT 178
consensus_4080#1      TTAGTGACAAATGCAATCAACAACAATGAGAAACAACACAAGC-CACAGATAAAACAATC 165
                      *  ***  * **     ** *** *   ** *  ***  ** *    ** *   ***** 

consensus_4080#0      TCACTAACTAAACCTACGAGCATTCAGGTCTATCTCGTCAAGATTACGGATAAAAACGAA 238
consensus_4080#1      TTGG-AACCGAAACCAGAAGTATACAGTTCTAATGCGCTAC-ACTACTAATAAGTTTGGC 223
                      *    ***  ** * *  ** ** *** ****   **  *  * ***  ****    *  

consensus_4080#0      ATTAAGAAGGTGCAAGTATGCAACGCGAAAAATCTGAAAAAAATTGACTGCAGAGATACA 298
consensus_4080#1      GCTACGCAA-CGCAAAC------------------------------------------- 239
                        ** * *   ****                                             

consensus_4080#0      AAAACTCAACCTAGCTATGAATTGCAGATAATTACGGAAAATAAGATATGGGTATTTAAT 358
consensus_4080#1      ------------------------------------------------------------
                                                                                  

consensus_4080#0      GCTTTAAAATTAGAAGAAAAAAGACATTTTATCAGTTCATTTTGTCGTACACTTGCAACA 418
consensus_4080#1      ------------------------------------------------------------
                                                                                  

consensus_4080#0      CTTCTACCACATGTAATCAAAGATATAGAATTAGTCAATTTCCCACAAGATAAAATTTCT 478
consensus_4080#1      ------------------------------------------------------------
                                                                                  

consensus_4080#0      CCACTTAGCCAAAATGAAACATTGGATGCTTTGCTTAA 516
consensus_4080#1      --------------------------------------