These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_41#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [TGGAAGGAAATAAACCTTCGTTTACACATGATTTCAACTGTCTTATTGATTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATGTAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGTCTGTGATTGATATACTGTTGTGTTATTTCGATTGGGTGTCATTAGATTCATTTATGCAAACCAGTCAATCATTATGGAATACATATCAGTACATTCATAAATCAAATATGAAAGTTTCTAATGAGAATGAGAATGTAAACGTGTTATCAACGGTATCACCGGAATCAAGCGTTNTACGTTTACAAAACAGTGAATCTCATGAACATCGNATTGAACTGTCATGTTCATCGTCATTCGAAGTTTTATTTTCATCATCGT] [+] EMBL CD178619 [TGGAAGGAAATAAACCTTCGTTTACACATGATTTCAACTGTCTTATTGATTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATGTAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGTCTGTGATTGATATACTGTTGTGTTATTTCGATTGGGTGTCATTAGATTCATTTATGCAAACCAGTCAATCATTATGGAATACATATCAGTACATTCATAAATCAAATATGAAAGTTTCTAATGAGAATGAGAATGTAAACGTGTTATCAACGGTATCACCGGAATCAAGCGTTNTACGTTTACAAAACAGTGAATCTCATGAACATCGNATTGAACTGTCATGTTCATCGTCATTCGAAGTTTTATTTTCATCATCGT] consensusID : consensus_41#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [AAAGCAGTAATGGACAAGGCGATATCATGTCGTTTAGCAACTCAATGATCAACCAATATTTTTCGAAATGTTCTNNGTTAAATATTTGCTTCTTTTTTCGTAATTTCAGTGATTTCAACTGTCTTATTGATTTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATGTAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGTCTGTGGTGAGTAACTCCCACTACAGATGACTTTGTTTTCTGTCGTCCTACCAGTTTTTCTTTATTTTAATAGGCTAGTTTTTATCTAATGTAATAATATTATTTTCT] [-] EMBL CD120182 [AAAGCAGTAATGGACAAGGCGATATCATGTCGTTTAGCAACTCAATGATCAACCAATATTTTTCGAAATGTTCTNNGTTAAATATTTGCTTCTTTTTTCGTAATTTCAGTGATTTCAACTGTCTTATTGATTTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATGTAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGTCTGTGGTGAGTAACTCCCACTACAGATGACTTTGTTTTCTGTCGTCCTACCAGTTTTTCTTTATTTTAATAGGCTAGTTTTTATCTAATGTAATAATATTATTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_41#0 ------------------------------------------------------------ consensus_41#1 AAAGCAGTAATGGACAAGGCGATATCATGTCGTTTAGCAACTCAATGATCAACCAATATT 60 consensus_41#0 --------------TGGAAGGAAATAAACCTTCGTTTACACA-------TGATTTCAACT 39 consensus_41#1 TTTCGAAATGTTCTNNGTTAAATATTTGCTTCTTTTTTCGTAATTTCAGTGATTTCAACT 120 * * ** * * *** * * *********** consensus_41#0 GTCTTATTGATTTTT-ATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATG 98 consensus_41#1 GTCTTATTGATTTTTTATGCCAGTCCGATGTATTATTATCACGTAGTCCATTTCTAAATG 180 *************** ******************************************** consensus_41#0 TAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGT 158 consensus_41#1 TAAATGATATTAAATCCAATTCGAAGCTCTCGCATTTATTGGATCCAGGTTATCAACGGT 240 ************************************************************ consensus_41#0 CTGTGATTGATATACTGTTGTGTTATTTCGATTGGGTGTCATTAGATTCATTTATGCAAA 218 consensus_41#1 CTGTGGTGAGTA-ACTCCCACTACA---------GATGACTTTGTTTTCTGTCGT-CCTA 289 ***** * ** *** * * ** * ** *** * * * * consensus_41#0 CCAGTCAATCATTATGGAATACATATCAGTACATTCATAAATCAAATATGAAAGTTTCTA 278 consensus_41#1 CCAGTTTTTCTTTATTTTA-ATAGGCTAGTTTTTATCTAATGTAATAATATTATTTTCT- 347 ***** ** **** * * * *** * *** ** ** * ***** consensus_41#0 ATGAGAATGAGAATGTAAACGTGTTATCAACGGTATCACCGGAATCAAGCGTTNTACGTT 338 consensus_41#1 ------------------------------------------------------------ consensus_41#0 TACAAAACAGTGAATCTCATGAACATCGNATTGAACTGTCATGTTCATCGTCATTCGAAG 398 consensus_41#1 ------------------------------------------------------------ consensus_41#0 TTTTATTTTCATCATCGT 416 consensus_41#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||