These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4107#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence [CGAGGAATATATATTGTCTATGTATGCATTTTCAATTATTTACTTATACAAAGTTGCAAGTATTCGTTTGCCAAAAAATATTAACGCATTAAAGTACAATAGGTTTATCAGAAAAGGGTTTTTGGGAAGATTTTAGTAATTTTATGTAGTTGAAATCATAAGACAAATGAAGTAAGACCATTATGCAAAACTTGGAAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCGATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGTGATCTAGCTTCAATTGACTCCGGATTTCAACTAATAAAATTACTATTTGTTTGTTTTTTTCTTTTTTTGATAAAAAATATCTCTATTAAAAATTAAAAGAAAAAAAAAAAAAAAAA] [+] EMBL CD082190 [CGAGGAATATATATTGTCTATGTATGCATTTTCAATTATTTACTTATACAAAGTTGCAAGTATTCGTTTGCCAAAAAATATTAACGCATTAAAGTACAATAGGTTTATCAGAAAAGGGTTTTTGGGAAGATTTTAGTAATTTTATGTAGTTGAAATCATAAGACAAATGAAGTAAGACCATTATGCAAAACTTGGAAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCGATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGTGATCTAGCTTCAATTGACTCCGGATTTCAACTAATAAAATTACTATTTGTTTGTTTTTTTCTTTTTTTGATAAAAAA ] [-] EMBL AI395146 [ GACGTAAGACCATTATGCAAAACTTGGAAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCGATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGTGATCTAGCTTCAATTGACTCCGGATTTCAACTAATAAAATTACTATTTGTTTGTTTTTTTCTTTTTTTGATAAAAAATATCTCTATTAAAAATTAAAAGAAAAAAAAAAAAAAAAA] consensusID : consensus_4107#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [CATTGGGACTGTGTATTGCTAGGCGCCAGTGCCGTTTGACAGACAATATTAACACATTAAAGTACAATAGGTTTATCAGAAAAGGGTTTTTGGGAAGATTTTAGTAATTTTAGATAGTTGAAATCATAAGACAAATGAAGTAAGACCATTATGCAAAACTTGGCAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCCATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGAGATCTAGCTTCAATTGACTCCGGATTTCATCTAATAAGACTACTAGTTGTTTGCTTTTTTCTTTTTTTGATAAAAAAATCTCTATTAAAATTAACCT] [+] EMBL AI395072 [CATTGGGACTGTGTATTGCTAGGCGCCAGTGCCGTTTGACAGACAATATTAACACATTAAAGTACAATAGGTTTATCAGAAAAGGGTTTTTGGGAAGATTTTAGTAATTTTAGATAGTTGAAATCATAAGACAAATGAAGTAAGACCATTATGCAAAACTTGGCAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTACGAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCCATGTGCACTGCCACTGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGAGATCTAGCTTCAATTGACTCCGGATTTCATCTAATAAGACTACTAGTTGTTTGCTTTTTTCTTTTTTTGATAAAAAAATCTCTATTAAAATTAACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4107#0 CGAGGAATATATATTGTCTATGTATGCATTTTCAATTATTTACTTATACAAAGTTGCAAG 60 consensus_4107#1 --------------------------CATTGG-GACTGTGTATTGCT----AGGCGCCAG 29 **** * * * ** * * ** ** ** consensus_4107#0 TATTCGTTTGCCAAAAAATATTAACGCATTAAAGTACAATAGGTTTATCAGAAAAGGGTT 120 consensus_4107#1 TGC-CGTTTGACAGACAATATTAACACATTAAAGTACAATAGGTTTATCAGAAAAGGGTT 88 * ****** ** * ********* ********************************** consensus_4107#0 TTTGGGAAGATTTTAGTAATTTTATGTAGTTGAAATCATAAGACAAATGAAGTAAGACCA 180 consensus_4107#1 TTTGGGAAGATTTTAGTAATTTTAGATAGTTGAAATCATAAGACAAATGAAGTAAGACCA 148 ************************ ********************************** consensus_4107#0 TTATGCAAAACTTGGAAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTAC 240 consensus_4107#1 TTATGCAAAACTTGGCAGTACTGGATGGCTCAGTGATCTAATGGTTGAGCGGTCACGTAC 208 *************** ******************************************** consensus_4107#0 GAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCGATGTGCACTGCCAC 300 consensus_4107#1 GAAACTGATAGATCCTGGGTTTGAATCTCACAAGGTGGGATTGTCCATGTGCACTGCCAC 268 ********************************************* ************** consensus_4107#0 TGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGTGAT 360 consensus_4107#1 TGAGGAGTCCCACTATGGGACGAAACTGCCGTTCAGTTCTTTCAGGTTTTCTATGGAGAT 328 ******************************************************** *** consensus_4107#0 CTAGCTTCAATTGACTCCGGATTTCAACTAATAAAATTACTATTTGTTTGTTTTTTTCTT 420 consensus_4107#1 CTAGCTTCAATTGACTCCGGATTTCATCTAATAAGACTACTAGTTGTTTGCTTTTTTCTT 388 ************************** ******* * ***** ******* ********* consensus_4107#0 TTTTTGATAAAAAATATCTCTATTAAAAATTAAAAGAAAAAAAAAAAAAAAAA 473 consensus_4107#1 TTTTTGATAAAAAA-ATCTCTATTAAAA-TTAACCT----------------- 422 ************** ************* **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||