cluster # 4110

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Schistosoma mansoni
cluster # 4110 cluster # 4110 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4110#0 length = 1044 sequences # 2

consensus_4110#1 length = 206 sequences # 1

consensusID : consensus_4110#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1044
fasta sequence

                              [ACGAGGACGAATTTCTACGTATGCATTGTTCTTGTTTTCATTCGTCGAATTTCTTCTATGCATCACATGGGCACTTGTGACTGATATGACTATGGGAGTAGTTATTCCTACTCGCCGTTCGACAGCATCTGCGCTTCAAATGGTTATGAGTCATGCACTAGGGGATGCCATCAGTCCGGCTATCGTTGGTCGGATTGCAGTAGCTCTTACAGATCTGCATTCATTAGAAACACAATATTTAGGCTTACAAAGAGCATTATTTCTTACTGCGTTTGTTTGTGCTCTGGGAGGTTTTTTATTTCTTATAGTTACTTTATATTTGGTTAAAGCTAAGAATGATGTTCATAGAGCTATTCAAGCTTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCCATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATATATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTGATATTAAATTATTTTATTTCCGTTTCCATCGTTNTGTATTATAAAAAGT-AGCTAATAGCANACAGATAGAATTNTGATACATTGAAAGGTCAGCATTTGTTTTCTTTATAGTTACATTTGTTACTCTAACAGGTTGTCTATCTATCTATCTATGTCATCAAGGCAGTAGATTTTGTGTCTTGTTGAACTAATATTCTTATTGTTAGATTTGTGAATTACTTGTTCTCTTTTTTTAAGTATCATTATTACCTTTTATTCTCTTTACTATTAATACAGAAATCGTACTGTTCTATGTATATTCAATTTAATAATACTTAAATGATTAAATCATCATTGTATTTGTAATAGGGGTAATTTCAACAATATTTGAAGATAAAACATCAGTCAATCATTATTGTGTAAAATGTTCGGTTTTAATGGGGATCTCTTCTCTGTATATGTTTTCTTTTCACTTATATTTCAAAAAAATAATTTTAATATGTGAACTATTGGGTTTATCAGATCATAATAATT]

[+] EMBL CD082262             [ACGAGGACGAATTTCTACGTATGCATTGTTCTTGTTTTCATTCGTCGAATTTCTTCTATGCATCACATGGGCACTTGTGACTGATATGACTATGGGAGTAGTTATTCCTACTCGCCGTTCGACAGCATCTGCGCTTCAAATGGTTATGAGTCATGCACTAGGGGATGCCATCAGTCCGGCTATCGTTGGTCGGATTGCAGTAGCTCTTACAGATCTGCATTCATTAGAAACACAATATTTAGGCTTACAAAGAGCATTATTTCTTACTGCGTTTGTTTGTGCTCTGGGAGGTTTTTTATTTCTTATAGTTACTTTATATTTGGTTAAAGCTAAGAATGATGTTCATAGAGCTATTCAAGCTTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCCATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATATATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTGATATTAAATTATTTTATTTCCGTTTCCATCGTTNTGTATTATAAAAAGT AGCTAATAGCANACAGATAGAATTNTGATACATTGAAAGGTCAGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD075869             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AACTTTATACTGCTCTTATTATCTCTTGATATTAAATTATTTTATTTCCGTTTCCATCGTTTTGTATTAT AAAAGTAAGCTAATAGCAAACAGATAGAATTTTGATACATTGAAAGGTCAGCATTTGTTTTCTTTATAGTTACATTTGTTACTCTAACAGGTTGTCTATCTATCTATCTATGTCATCAAGGCAGTAGATTTTGTGTCTTGTTGAACTAATATTCTTATTGTTAGATTTGTGAATTACTTGTTCTCTTTTTTTAAGTATCATTATTACCTTTTATTCTCTTTACTATTAATACAGAAATCGTACTGTTCTATGTATATTCAATTTAATAATACTTAAATGATTAAATCATCATTGTATTTGTAATAGGGGTAATTTCAACAATATTTGAAGATAAAACATCAGTCAATCATTATTGTGTAAAATGTTCGGTTTTAATGGGGATCTCTTCTCTGTATATGTTTTCTTTTCACTTATATTTCAAAAAAATAATTTTAATATGTGAACTATTGGGTTTATCAGATCATAATAATT]




>consensus_4110#0
ACGAGGACGAATTTCTACGTATGCATTGTTCTTGTTTTCATTCGTCGAATTTCTTCTATG
CATCACATGGGCACTTGTGACTGATATGACTATGGGAGTAGTTATTCCTACTCGCCGTTC
GACAGCATCTGCGCTTCAAATGGTTATGAGTCATGCACTAGGGGATGCCATCAGTCCGGC
TATCGTTGGTCGGATTGCAGTAGCTCTTACAGATCTGCATTCATTAGAAACACAATATTT
AGGCTTACAAAGAGCATTATTTCTTACTGCGTTTGTTTGTGCTCTGGGAGGTTTTTTATT
TCTTATAGTTACTTTATATTTGGTTAAAGCTAAGAATGATGTTCATAGAGCTATTCAAGC
TTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCC
ATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATA
TATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTGATATTAAAT
TATTTTATTTCCGTTTCCATCGTTNTGTATTATAAAAAGTAGCTAATAGCANACAGATAG
AATTNTGATACATTGAAAGGTCAGCATTTGTTTTCTTTATAGTTACATTTGTTACTCTAA
CAGGTTGTCTATCTATCTATCTATGTCATCAAGGCAGTAGATTTTGTGTCTTGTTGAACT
AATATTCTTATTGTTAGATTTGTGAATTACTTGTTCTCTTTTTTTAAGTATCATTATTAC
CTTTTATTCTCTTTACTATTAATACAGAAATCGTACTGTTCTATGTATATTCAATTTAAT
AATACTTAAATGATTAAATCATCATTGTATTTGTAATAGGGGTAATTTCAACAATATTTG
AAGATAAAACATCAGTCAATCATTATTGTGTAAAATGTTCGGTTTTAATGGGGATCTCTT
CTCTGTATATGTTTTCTTTTCACTTATATTTCAAAAAAATAATTTTAATATGTGAACTAT
TGGGTTTATCAGATCATAATAATT

consensusID : consensus_4110#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [CGCAGGCAGAAATTCGGCACGAGGGCTATTCAAGCTTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCCATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATATATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTG]

[+] EMBL CD078123             [CGCAGGCAGAAATTCGGCACGAGGGCTATTCAAGCTTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCCATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATATATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTG]




>consensus_4110#1
CGCAGGCAGAAATTCGGCACGAGGGCTATTCAAGCTTCTCAACATGACATGGTTGCTGTA
ATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCCATCATCTACTCATAATGAAGTGTTC
ACTTGATCAAATATATTCATTATTAATTGTTTATATATATATACTTATACGTCTATTCAA
CTTTATACTGCTCTTATTATCTCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4110#0      ACGAGGACGAATTTCTACGTATGCATTGTTCTTGTTTTCATTCGTCGAATTTCTTCTATG 60
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      CATCACATGGGCACTTGTGACTGATATGACTATGGGAGTAGTTATTCCTACTCGCCGTTC 120
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      GACAGCATCTGCGCTTCAAATGGTTATGAGTCATGCACTAGGGGATGCCATCAGTCCGGC 180
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      TATCGTTGGTCGGATTGCAGTAGCTCTTACAGATCTGCATTCATTAGAAACACAATATTT 240
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      AGGCTTACAAAGAGCATTATTTCTTACTGCGTTTGTTTGTGCTCTGGGAGGTTTTTTATT 300
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      TCTTATAGTTACTTTATATTTGGTTAAAGCTAAGAATGATGTTCATAGAGCTATTCAAGC 360
consensus_4110#1      ------------------------CGCAGGCAGAAATTCGGCACG-AGGGCTATTCAAGC 35
                                                 **  *  ***   *  *  ** ***********

consensus_4110#0      TTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCC 420
consensus_4110#1      TTCTCAACATGACATGGTTGCTGTAATAAGCGGACAAGAAATTGAGGTTCCTGCAACCCC 95
                      ************************************************************

consensus_4110#0      ATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATA 480
consensus_4110#1      ATCATCTACTCATAATGAAGTGTTCACTTGATCAAATATATTCATTATTAATTGTTTATA 155
                      ************************************************************

consensus_4110#0      TATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTGATATTAAAT 540
consensus_4110#1      TATATATACTTATACGTCTATTCAACTTTATACTGCTCTTATTATCTCTTG--------- 206
                      ***************************************************         

consensus_4110#0      TATTTTATTTCCGTTTCCATCGTTNTGTATTATAAAAAGTAGCTAATAGCANACAGATAG 600
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      AATTNTGATACATTGAAAGGTCAGCATTTGTTTTCTTTATAGTTACATTTGTTACTCTAA 660
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      CAGGTTGTCTATCTATCTATCTATGTCATCAAGGCAGTAGATTTTGTGTCTTGTTGAACT 720
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      AATATTCTTATTGTTAGATTTGTGAATTACTTGTTCTCTTTTTTTAAGTATCATTATTAC 780
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      CTTTTATTCTCTTTACTATTAATACAGAAATCGTACTGTTCTATGTATATTCAATTTAAT 840
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      AATACTTAAATGATTAAATCATCATTGTATTTGTAATAGGGGTAATTTCAACAATATTTG 900
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      AAGATAAAACATCAGTCAATCATTATTGTGTAAAATGTTCGGTTTTAATGGGGATCTCTT 960
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      CTCTGTATATGTTTTCTTTTCACTTATATTTCAAAAAAATAATTTTAATATGTGAACTAT 1020
consensus_4110#1      ------------------------------------------------------------
                                                                                  

consensus_4110#0      TGGGTTTATCAGATCATAATAATT 1044
consensus_4110#1      ------------------------