These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 749 fasta sequence [TTACAATCTCATTTAATAGTAATGTACAAGTGTTATATTATATATACTTTATAATAGTAACAGTGTACACATATATAGAGAAATATATTTAGTCACAGTGTATACAGTATTAACCCATTTGTTAACTGTTAAGCACAGTTTATATTATGCATCTATCATTAATTGGCCGTTGCCTTTTCCTTTTTTGTTTATTTTGATAAGCATATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGTATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTTTAAATACAGAATAAACCATAGATCGTTGATTAGTGTACTTATTTGTGTGCTCGGATGGGGAGGTGTATATTTTTTTATTGTATATGCAAAATAATGCTCTAACAGTGATATTCCTTAAAAATGTTGGGTTGTTAGAAACCGTAAATATCATTAGTGAGTACAAACAAAATGCTGTTCCAGAAGAGAAGTTGTAGGATTATTCCAAAAAATATCAAGTGATAATCTTTACATGTCTAGACAGTGTGAATTAGTAGTGTATATCCAAATTAACTAACTTCCAACTGGATAGTCATGATGATGTTGGAACTAATGATTGACTTGGTGATGATGGTCGAAAATTAAGCAGTTGTTTGCCAACTAAATATTTTTCATCTTTAATATGCAAATAAAGACGTCGGATTTGATCGATGCACAGAGTCAATAACA] [+] EMBL CD074986 [TTACAATCTCATTTAATAGTAATGTACAAGTGTTATATTATATATACTTTATAATAGTAACAGTGTACACATATATAGAGAAATATATTTAGTCACAGTGTATACAGTATTAACCCATTTGTTAACTGTTAAGCACAGTTTATATTATGCATCTATCATTAATTGGCCGTTGCCTTTTCCTTTTTTGTTTATTTTGATAAGCATATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGTATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTTTAAATACAGAATAAACCATAGATCGTTGATTAGTGTACTTATTTGTGTGCTCGGATGGGGAGGTGTATATTTTTTTATTGTATATGCAAAATAATGCTCTAACAGTGATATTCCTTAAAAATGTTGGGTTGTTAGAAACCGTAAATATCATTAGTGAGTACAAACAAAATGCTGTTCCAGAAGAGAAGTTGTAGGATTATTCCAAAAAATATCAAGTGATAATCTTTACATGTCTAGACAGTGTGAATTAGTAGTGTATATCCAAATTAACTAACTTCCAACTGGATAGTCATGATGATGTTGGAACTAATGATTGACTTGGTGATGATGGTCGAAAATTAAGCAGTTGTTTGCCAACTAAATATTTTTCATCTTTAATATGCAAATAAAGACGTCGGATTTGATCGATGCACAGAGTCAATAACA] [+] EMBL CD200905 [ ATTTTTTTATGGTATATGCAAAATAATGCTCTAACAGTGATATTCCTTAAAAATGTTGGGTTGTTAGAAACCGTTTTTTTCATTAGTGAGTACAGACAAAATGCTGTTCCAGAAGAGAAGTTGTAGGATTATTCCAAAAAATATCAAGTGATAATCTTTACATGTCTAGACAGTGTGAATTAGTAGTGTATATCCAAATTAACTAACTTCCAACTGGATAGTCATGATGATGTTGGAACTAATGATTGACTTGGTGATGATGGTCGAAAATTAAGCAGTTGTTTGCCAACTAAATATTTTTCATCTTTAATATGCAAATAAAGACGTCGGATTTGATCGGTGCACAGAGTCAAT ] consensusID : consensus_4111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [CCATAAAAGTTNTTANCCAATGGAAAAAGCGTCGAATTGAAAAGTCATCANCTAAGAGTCGACCAACAATACGTCGTCGTAAAGCGTTGGAGAGTTCTGTACCTTTGGATAATTTAATAACATTGAGTTTTGATGAAAATACCAATCGAGTGGACAGTAATGCATGTAGTGATGAGAAAACTGATTTGAAAGTCAACCTAACATCACGTCGCTTTGTAAACTGGTGTCCAGGAACCACATTTCATTCGTGTTTCAGATCCAGCAGAAGATGAAGCTGTCAAGATTCTTATGAATAAGCATATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGTATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTTTAAATACAGAATAAACCAT] [-] EMBL AI026208 [CCATAAAAGTTNTTANCCAATGGAAAAAGCGTCGAATTGAAAAGTCATCANCTAAGAGTCGACCAACAATACGTCGTCGTAAAGCGTTGGAGAGTTCTGTACCTTTGGATAATTTAATAACATTGAGTTTTGATGAAAATACCAATCGAGTGGACAGTAATGCATGTAGTGATGAGAAAACTGATTTGAAAGTCAACCTAACATCACGTCGCTTTGTAAACTGGTGTCCAGGAACCACATTTCATTCGTGTTTCAGATCCAGCAGAAGATGAAGCTGTCAAGATTCTTATGAATAAGCATATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGTATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTTTAAATACAGAATAAACCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4111#0 ------------------------------------------------------------ consensus_4111#1 CCATAAAAGTTNTTANCCAATGGAAAAAGCGTCGAATTGAAAAGTCATCANCTAAGAGTC 60 consensus_4111#0 ---------------------------------TTACAATCTCATTTAATAGTAATGTAC 27 consensus_4111#1 GACCAACAATACGTCGTCGTAAAGCGTTGGAGAGTTCTGTACCTTTGGATAATTTAATAA 120 * * * * ** *** * ** consensus_4111#0 AAGTGTTATATTATATATACTTTATAATAGTA-ACAGTGTACACATATATAGAGAAATAT 86 consensus_4111#1 CATTGAGTTTTGATGAAAATACCAATCGAGTGGACAGTA-ATGCATGTAGTGATGAGAAA 179 * ** * * ** * * * *** ***** * *** ** ** * * consensus_4111#0 ATTTAGTC-ACAGTGTATACAGTATTAACCCA-TTTGTTAACTGTTAAGCACAGTTTATA 144 consensus_4111#1 ACTGATTTGAAAGTCAACCTAACATCACGTCGCTTTGTAAACTGGTGTCCAGGAACCACA 239 * * * * * *** * * ** * * ***** ***** * ** * * consensus_4111#0 TTATGCATCTATCATTAATTGGCCGTTGCCTTTTCCTTTTTTGTTTATTTTGA-TAAGCA 203 consensus_4111#1 TTTCATTCGTGTTTCAGATCCAGCAGAAGATGAAGCTGTCAAGATTCTTATGAATAAGCA 299 ** * * ** * * ** * * ** ** *** ****** consensus_4111#0 TATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGT 263 consensus_4111#1 TATTCAAGTGAAAACCAAAAAGCATGAGAAAATTGATACAAGAAAAATGTGAAAACATGT 359 ************************************************************ consensus_4111#0 ATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTT 323 consensus_4111#1 ATTTTTATAAATATTGTATAGTCGCGTTTGTTTGTTTTGTTTTTTGAGAAAAAAATATTT 419 ************************************************************ consensus_4111#0 TAAATACAGAATAAACCATAGATCGTTGATTAGTGTACTTATTTGTGTGCTCGGATGGGG 383 consensus_4111#1 TAAATACAGAATAAACCAT----------------------------------------- 438 ******************* consensus_4111#0 AGGTGTATATTTTTTTATTGTATATGCAAAATAATGCTCTAACAGTGATATTCCTTAAAA 443 consensus_4111#1 ------------------------------------------------------------ consensus_4111#0 ATGTTGGGTTGTTAGAAACCGTAAATATCATTAGTGAGTACAAACAAAATGCTGTTCCAG 503 consensus_4111#1 ------------------------------------------------------------ consensus_4111#0 AAGAGAAGTTGTAGGATTATTCCAAAAAATATCAAGTGATAATCTTTACATGTCTAGACA 563 consensus_4111#1 ------------------------------------------------------------ consensus_4111#0 GTGTGAATTAGTAGTGTATATCCAAATTAACTAACTTCCAACTGGATAGTCATGATGATG 623 consensus_4111#1 ------------------------------------------------------------ consensus_4111#0 TTGGAACTAATGATTGACTTGGTGATGATGGTCGAAAATTAAGCAGTTGTTTGCCAACTA 683 consensus_4111#1 ------------------------------------------------------------ consensus_4111#0 AATATTTTTCATCTTTAATATGCAAATAAAGACGTCGGATTTGATCGATGCACAGAGTCA 743 consensus_4111#1 ------------------------------------------------------------ consensus_4111#0 ATAACA 749 consensus_4111#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||