cluster # 4118

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Schistosoma mansoni
cluster # 4118 cluster # 4118 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4118#0 length = 840 sequences # 2

consensus_4118#1 length = 154 sequences # 1

consensusID : consensus_4118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 840
fasta sequence

                              [CCCTACAGGTAGGGTTTCCTAACATTTTAAAAATAAACTTCCAGACTTATAAATGGGATATTTCAAGTAGTTGCATGTGATGCACAAGAAACTTAAGAGATAAGCTTCGCGCTGGTTGCTAGTCATCAGAAATCAGTGTCTTTGATTTCGGAGGTGACGCTCCCTGTAGTCGATCAGCCGTAAGGATTAGACAAGTATGACATTAGTTATTATGCAAAGAGACCAGTCGACAGAAATGATATAGTTGCGAACTATTTAAGCCTTAATCATTGTAAAAGTCCAGTACTATAACGTATAAAATTTTCCGGTCCAGCCACAAGTTGTTTGTATATCCTCTATTTTTACCACTGTAATACAGTAATTGTGAATTTATAACTATGGCACTTGGGATTTAAACCATTGAAAACAATTTTTCGTCTTAATACTGTCTTTGAGAATACTCTGTGCGGACCTTTTAAGTTACTAGATAACTATTTATTCTTTGTTTTCATGTAAATGTATGTCGTGCTACTTCGGAGGCATGACTGGTTAGTATTCATTTGATATCTTCAGATGTAAGCAGCCTCAAAAAAAACCTCGTGTCTTTTCACTCTNTACAGATTGTCCGTCCTGTAAGATGGGAGCAAACGTTGTATGCACTATATGATCGTCCACTAGATGTCCCTTTTCCTCGTACAATTGAATCTGGTCCTGGCCGACAACTTGGTGCTATGCTGAGGATGGTCAGTCGTAGAGCGTTTGATAGTTACAGCTCTGTGGACATGTAGATGTGTCATTCTCTTCAGTCGCATTTAATGTATACCCATGTATATACTGACCAACATGTACAGCTAAGCAAAA]

[+] EMBL CD082804             [CCCTACAGGTAGGGTTTCCTAACATTTTAAAAATAAACTTCCAGACTTATAAATGGGATATTTCAAGTAGTTGCATGTGATGCACAAGAAACTTAAGAGATAAGCTTCGCGCTGGTTGCTAGTCATCAGAAATCAGTGTCTTTGATTTCGGAGGTGACGCTCCCTGTAGTCGATCAGCCGTAAGGATTAGACAAGTATGACATTAGTTATTATGCAAAGAGACCAGTCGACAGAAATGATATAGTTGCGAACTATTTAAGCCTTAATCATTGTAAAAGTCCAGTACTATAACGTATAAAATTTTCCGGTCCAGCCACAAGTTGTTTGTATATCCTCTATTTTTACCACTGTAATACAGTAATTGTGAATTTATAACTATGGCACTTGGGATTTAAACCATTGAAAACAATTTTTCGTCTTAATACTGTCTTTGAGAATACTCTGTGCGGACCTTTTAAGTTACTAGATAACTATTTATTCTTTGTTTTCATGTAAATGTATGTCGTGCTACTTCGGAGGCATGACTGGTTAGTATTCATTTGATATCTTCAGATGTAAGCAGCCTCAAAAAAAACCTCGTGTCTTTTCACTCTNTACAGAT                                                                                                                                                                                                                                               ]
[-] EMBL CD076396             [                                                                                                                                                                                                                                                                               GTAANAGTCCAGTACTATAACGTATAAAATTTTCCGGTCCAGCCACAAGTTGTTTGTATATCCTCTATTTTTACCACTGTAATACAGTAATTGTGAATTTATAACTATGGCACTTGGGATTTAAACCATTGAAAACAATTTTTCGTCTTAATACTGTCTTTGAGAATACTCTGTGCGGACCTTTTAAGTTACTAGATAACTATTTATTCTTTGTTTTCATGTAAATGTATGTCGTGCTACTTCGGAGGCATGACTGGTTAGTATTCATTTGATATCTTCAGATGTAAGCAGCCTCAAAAAAAACCTCGTGTCTTTTCACTCTTTACAGATTGTCCGTCCTGTAAGATGGGAGCAAACGTTGTATGCACTATATGATCGTCCACTAGATGTCCCTTTTCCTCGTACAATTGAATCTGGTCCTGGCCGACAACTTGGTGCTATGCTGAGGATGGTCAGTCGTAGAGCGTTTGATAGTTACAGCTCTGTGGACATGTAGATGTGTCATTCTCTTCAGTCGCATTTAATGTATACCCATGTATATACTGACCAACATGTACAGCTAAGCAAAA]




>consensus_4118#0
CCCTACAGGTAGGGTTTCCTAACATTTTAAAAATAAACTTCCAGACTTATAAATGGGATA
TTTCAAGTAGTTGCATGTGATGCACAAGAAACTTAAGAGATAAGCTTCGCGCTGGTTGCT
AGTCATCAGAAATCAGTGTCTTTGATTTCGGAGGTGACGCTCCCTGTAGTCGATCAGCCG
TAAGGATTAGACAAGTATGACATTAGTTATTATGCAAAGAGACCAGTCGACAGAAATGAT
ATAGTTGCGAACTATTTAAGCCTTAATCATTGTAAAAGTCCAGTACTATAACGTATAAAA
TTTTCCGGTCCAGCCACAAGTTGTTTGTATATCCTCTATTTTTACCACTGTAATACAGTA
ATTGTGAATTTATAACTATGGCACTTGGGATTTAAACCATTGAAAACAATTTTTCGTCTT
AATACTGTCTTTGAGAATACTCTGTGCGGACCTTTTAAGTTACTAGATAACTATTTATTC
TTTGTTTTCATGTAAATGTATGTCGTGCTACTTCGGAGGCATGACTGGTTAGTATTCATT
TGATATCTTCAGATGTAAGCAGCCTCAAAAAAAACCTCGTGTCTTTTCACTCTNTACAGA
TTGTCCGTCCTGTAAGATGGGAGCAAACGTTGTATGCACTATATGATCGTCCACTAGATG
TCCCTTTTCCTCGTACAATTGAATCTGGTCCTGGCCGACAACTTGGTGCTATGCTGAGGA
TGGTCAGTCGTAGAGCGTTTGATAGTTACAGCTCTGTGGACATGTAGATGTGTCATTCTC
TTCAGTCGCATTTAATGTATACCCATGTATATACTGACCAACATGTACAGCTAAGCAAAA

consensusID : consensus_4118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 154
fasta sequence

                              [TAGACAGGATGGGAGATTTTCAGGAACCTTCGATACCTGTTATTAGTGCCGTAGATGTGTTACCGTATAGAGGTACAATGAATATTAAACGAAAACTTGCTATGCAGATTGTCCGTCCTGTAAGATGGGAGCAAACGTTGTATGCACTATATGA]

[+] EMBL CD192212             [TAGACAGGATGGGAGATTTTCAGGAACCTTCGATACCTGTTATTAGTGCCGTAGATGTGTTACCGTATAGAGGTACAATGAATATTAAACGAAAACTTGCTATGCAGATTGTCCGTCCTGTAAGATGGGAGCAAACGTTGTATGCACTATATGA]




>consensus_4118#1
TAGACAGGATGGGAGATTTTCAGGAACCTTCGATACCTGTTATTAGTGCCGTAGATGTGT
TACCGTATAGAGGTACAATGAATATTAAACGAAAACTTGCTATGCAGATTGTCCGTCCTG
TAAGATGGGAGCAAACGTTGTATGCACTATATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4118#0      CCCTACAGGTAGGGTTTCCTAACATTTTAAAAATAAACTTCCAGACTTATAAATGGGATA 60
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      TTTCAAGTAGTTGCATGTGATGCACAAGAAACTTAAGAGATAAGCTTCGCGCTGGTTGCT 120
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      AGTCATCAGAAATCAGTGTCTTTGATTTCGGAGGTGACGCTCCCTGTAGTCGATCAGCCG 180
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      TAAGGATTAGACAAGTATGACATTAGTTATTATGCAAAGAGACCAGTCGACAGAAATGAT 240
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      ATAGTTGCGAACTATTTAAGCCTTAATCATTGTAAAAGTCCAGTACTATAACGTATAAAA 300
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      TTTTCCGGTCCAGCCACAAGTTGTTTGTATATCCTCTATTTTTACCACTGTAATACAGTA 360
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      ATTGTGAATTTATAACTATGGCACTTGGGATTTAAACCATTGAAAACAATTTTTCGTCTT 420
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      AATACTGTCTTTGAGAATACTCTGTGCGGACCTTTTAAGTTACTAGATAACTATTTATTC 480
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      TTTGTTTTCATGTAAATGTATGTCGTGCTACTTCGGAGGCATGACTGGTTAGTATTCATT 540
consensus_4118#1      ------------TAGACAGGATGGGAGATTTTCAGGAACCTTCGATACCTGTTATTAGTG 48
                                  ** *        * * *  *  ***  * *   *   *  ****  * 

consensus_4118#0      TGATATCTTCAGATGTAAGCAGCCTCAAAAAAAACCTCGTGTCTTTTCACTCTNTACAGA 600
consensus_4118#1      CCGTAGATGTGTTACCGTATAGAGGTACAATGAATATTAAACGAAAACTTGCTATGCAGA 108
                         **  *            **    * **  **  *          *   ** * ****

consensus_4118#0      TTGTCCGTCCTGTAAGATGGGAGCAAACGTTGTATGCACTATATGATCGTCCACTAGATG 660
consensus_4118#1      TTGTCCGTCCTGTAAGATGGGAGCAAACGTTGTATGCACTATATGA-------------- 154
                      **********************************************              

consensus_4118#0      TCCCTTTTCCTCGTACAATTGAATCTGGTCCTGGCCGACAACTTGGTGCTATGCTGAGGA 720
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      TGGTCAGTCGTAGAGCGTTTGATAGTTACAGCTCTGTGGACATGTAGATGTGTCATTCTC 780
consensus_4118#1      ------------------------------------------------------------
                                                                                  

consensus_4118#0      TTCAGTCGCATTTAATGTATACCCATGTATATACTGACCAACATGTACAGCTAAGCAAAA 840
consensus_4118#1      ------------------------------------------------------------