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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4127#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 780 fasta sequence
[GATTGTTGTTTGTTAAATTGTTTTTACGGCTCATATGCGAATTTACACGGAATCATGAAACATGTAAATGACGCCCATAAATGTATCAGAGTAAGAAAGCACGAAAATGCCACTTGCGAAATGTCCACACATAAAATAAAAAAAATTTGTTAAGAACCCAGAAAGCGTTTTTTTGAGGTGACTAACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAAAAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATATCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTACTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACTTGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAACTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTTCGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGAGTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAATTGTGTAAGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGCTGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCTAAAACATAAAGGGTGACAAAAC]
[+] EMBL CD075006 [GATTGTTGTTTGTTAAATTGTTTTTACGGCTCATATGCGAATTTACACGGAATCATGAAACATGTAAATGACGCCCATAAATGTATCAGAGTAAGAAAGCACGAAAATGCCACTTGCGAAATGTCCACACATAAAATAAAAAAAATTTGTTAAGAACCCAGAAAGCGTTTTTTTGAGGTGACTAACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAAAAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATATCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTACTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACTTGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAACTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTTCGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGAGTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAATTGTGTAAGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGCTGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCTAAAACATAAAGGGTGACAAAAC]
consensusID : consensus_4127#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence
[AACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAAAAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATATCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTACTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACTTGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAACTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTTCGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGAGTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAGTTGTGTAAGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGCTGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCGTGAGTCATCTGAAAGACNNGT-AGT-ACATCGTATTACATGTTTTAAAAGACGTAACGACTGCTCCCTCGCCAAATGGATCACCATTTTATCCAAAACAGTGGCTACATGTGCAAATCGTTCATAGGTTTGACAGATGTACGCTAGGCCTACTTCATCCAACAACAGTTTCTGCATGATGAAAGTAGCTACAGTCTTGC]
[+] EMBL CD131701 [AACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAAAAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATATCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTACTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACTTGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAACTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTTCGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGAGTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAGTTGTGTAAGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGCTGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCGTGAGTCATCTGAAAGACNNGT AGT ACATCGTAT ]
[+] EMBL CD167964 [ GACACTTGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAACTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTTCGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGAGTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAATTGTGTAAGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGCTGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCGTGAGTCATCTGAAAGAC GTAAGTAACATCGTATTACATGTTTTAAAAGACGTAACGACTGCTCCCTCGCCAAATGGATCACCATTTTATCCAAAACAGTGGCTACATGTGCAAATCGTTCATAGGTTTGACAGATGTACGCTAGGCCTACTTCATCCAACAACAGTTTCTGCATGATGAAAGTAGCTACAGTCTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4127#0 GATTGTTGTTTGTTAAATTGTTTTTACGGCTCATATGCGAATTTACACGGAATCATGAAA 60
consensus_4127#1 ------------------------------------------------------------
consensus_4127#0 CATGTAAATGACGCCCATAAATGTATCAGAGTAAGAAAGCACGAAAATGCCACTTGCGAA 120
consensus_4127#1 ------------------------------------------------------------
consensus_4127#0 ATGTCCACACATAAAATAAAAAAAATTTGTTAAGAACCCAGAAAGCGTTTTTTTGAGGTG 180
consensus_4127#1 ------------------------------------------------------------
consensus_4127#0 ACTAACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAA 240
consensus_4127#1 ---AACCACTTTTCGAACAAAAGTTAAACACTGAATCTGATTAAACCAAGGAAGGAATAA 57
*********************************************************
consensus_4127#0 AAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATA 300
consensus_4127#1 AAAGCTTTTGATTGGAGGAAAATCAGAAATAATTATGTACATATAATAAAACCAAGTATA 117
************************************************************
consensus_4127#0 TCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTA 360
consensus_4127#1 TCTCAAATAGAATATGCAAGGCTTCCTAAAAAGTAGGTTAGTATGACGTTATTTCAGCTA 177
************************************************************
consensus_4127#0 CTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACT 420
consensus_4127#1 CTTGAAGATGCTGCAGGATCTAAAACCGAGCTGGAAGACACAGGACAAGATGTAGACACT 237
************************************************************
consensus_4127#0 TGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAA 480
consensus_4127#1 TGGGCACCTGATGTACTACTCGGTGCACCTGTAACGTTTGAAACTGACGGTCCAGAAGAA 297
************************************************************
consensus_4127#0 CTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTT 540
consensus_4127#1 CTTACAGTAGATACTGTGGTTACTACTGAAGAAGAAATTGTACTGGTTTTAAGAGCAGTT 357
************************************************************
consensus_4127#0 CGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGA 600
consensus_4127#1 CGAATGGCATTTGTAGTGTTCAGTGTATTGACATCAACCGAGCTAACACTAGAAGCAGGA 417
************************************************************
consensus_4127#0 GTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAATTGTGTA 660
consensus_4127#1 GTGCTAGACGTAGCCGTAGAACCAACGGCACGAACAGATAACTGGCGAATTAGTTGTGTA 477
**************************************************** *******
consensus_4127#0 AGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGC 720
consensus_4127#1 AGCCAACGTCTAGTAGCGACATCATTCTCTAACAAGCTACTGAATGTGCCGTCTACAAGC 537
************************************************************
consensus_4127#0 TGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTC-TAAAACAT---AAAGGGTGACA 776
consensus_4127#1 TGTTGCGGCAAACATGTTCGAAGAGCATCACGAGCTCGTGAGTCATCTGAAAGACNNGTA 597
************************************* * * *** **** *
consensus_4127#0 AAAC-------------------------------------------------------- 780
consensus_4127#1 GTACATCGTATTACATGTTTTAAAAGACGTAACGACTGCTCCCTCGCCAAATGGATCACC 657
**
consensus_4127#0 ------------------------------------------------------------
consensus_4127#1 ATTTTATCCAAAACAGTGGCTACATGTGCAAATCGTTCATAGGTTTGACAGATGTACGCT 717
consensus_4127#0 -------------------------------------------------------
consensus_4127#1 AGGCCTACTTCATCCAACAACAGTTTCTGCATGATGAAAGTAGCTACAGTCTTGC 772
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||