cluster # 4139

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4139 cluster # 4139 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4139#0 length = 628 sequences # 2

consensus_4139#1 length = 579 sequences # 1

consensusID : consensus_4139#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 628
fasta sequence

                              [ACGACGNAGNATTAGGTGGACAAACATAAAACTCTTCTCCATCCGTGAGAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGATCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCTAGTTCCCGAAAGCATTTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGATGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCTTTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTGTGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAGTTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTTTTTCCCAGTCAGCCTGTTTTTCGTACCATTTACGTTTGTGTACCCGTTTTGACCTGTCAGATTCCAGCGATAGATATTGTGAGCTGTAATGCCAATTAAATTCTCTTTAATGTTCTGCAAAAA]

[+] EMBL CD081670             [ACGACGNAGNATTAGGTGGACAAACATAAAACTCTTCTCCATCCGTGAGAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGATCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCTAGTTCCCGAAAGCATTTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGATGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCTTTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTGTGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAGTTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTTTTTCCCAGTCAGCCTGTTTTTCGTACCATTTACGTTTGTGTACCCGTTTTGACCTGTCAGATTCCAGCGATAGATATTGTGAGCTGTAATGCCAATTAAATTCTCTTT               ]
[-] EMBL SM112                [                                                                                                                                                                                                                                                                                                                                                                                                                                         TTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGC CCTCACTAC CAGTGTGGACTTCAGTTTTTTCCCAGTCAGCCTGTTTTTCGTACCATTT CGTTTGTGT CCCGTTTTGACCTGTCAGATTCCAGCGATAGATATTGTGAGCTGTAATGCCAATTAAATTCTCTTTAATGTTCTGCAAAAA]




>consensus_4139#0
ACGACGNAGNATTAGGTGGACAAACATAAAACTCTTCTCCATCCGTGAGAACTTGAAGGC
TGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGATCTGAACATTCA
GCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCTAGTTCCCGAAAG
CATTTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGATGACTATGGTGA
TTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCTTTCTCTTTCCTG
CATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTGTGATGAGTTTGA
TCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAGTTGCCTTGGCTA
GAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGCACCT
CACTACTCAGTGTGGACTTCAGTTTTTTCCCAGTCAGCCTGTTTTTCGTACCATTTACGT
TTGTGTACCCGTTTTGACCTGTCAGATTCCAGCGATAGATATTGTGAGCTGTAATGCCAA
TTAAATTCTCTTTAATGTTCTGCAAAAA

consensusID : consensus_4139#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 579
fasta sequence

                              [AAAAAAACTGGACATGCTTAGATTAGGTGGACAAACAGAAAACTCTTCTCACATTCGTGAGAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGATCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCTAGTTCCCGAAAGCATCTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGATGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCTTTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTGTGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAGTTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTNTTTCCCAGTCAGCCTGTTTTTCGTACCATTTACGTTTGTGTACCCGTCTTGACCTGTCAGAT]

[+] EMBL CD130919             [AAAAAAACTGGACATGCTTAGATTAGGTGGACAAACAGAAAACTCTTCTCACATTCGTGAGAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGATCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCTAGTTCCCGAAAGCATCTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGATGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCTTTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTGTGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAGTTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAAATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTNTTTCCCAGTCAGCCTGTTTTTCGTACCATTTACGTTTGTGTACCCGTCTTGACCTGTCAGAT]




>consensus_4139#1
AAAAAAACTGGACATGCTTAGATTAGGTGGACAAACAGAAAACTCTTCTCACATTCGTGA
GAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGA
TCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCT
AGTTCCCGAAAGCATCTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGA
TGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCT
TTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTG
TGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAG
TTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAA
ATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTNTTTCCCAGTCAGCCTGTTTTTCG
TACCATTTACGTTTGTGTACCCGTCTTGACCTGTCAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4139#0      -----------ACGACGNAGNATTAGGTGGACAAACATAAAACTCTTCTC-CATCCGTGA 48
consensus_4139#1      AAAAAAACTGGACATGCTTAGATTAGGTGGACAAACAGAAAACTCTTCTCACATTCGTGA 60
                                 **        **************** ************ *** *****

consensus_4139#0      GAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGA 108
consensus_4139#1      GAACTTGAAGGCTGAAACTCCTCTTTTAAGTAATGCAAGGCGCAAACTAGGATTGAGAGA 120
                      ************************************************************

consensus_4139#0      TCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCT 168
consensus_4139#1      TCTGAACATTCAGCAGCATGTTCATGTGCAGCCAGAAATAAAGCGACCCTCTAAAACTCT 180
                      ************************************************************

consensus_4139#0      AGTTCCCGAAAGCATTTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGA 228
consensus_4139#1      AGTTCCCGAAAGCATCTATGAGGAAGCATGCGAGAAATTCTGTGCATACGAAGATAGAGA 240
                      *************** ********************************************

consensus_4139#0      TGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCT 288
consensus_4139#1      TGACTATGGTGATTTATGCACTCGCCTTGATAATATAAACTCGCTTGTCGATGGAGTGCT 300
                      ************************************************************

consensus_4139#0      TTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTG 348
consensus_4139#1      TTCTCTTTCCTGCATGAGTCATCCTCCAGGTTTTGTTGGATTTTCAATCAATGAAGATTG 360
                      ************************************************************

consensus_4139#0      TGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAG 408
consensus_4139#1      TGATGAGTTTGATCCATCAGATTTTGAAATACCAGACTCTGAATTCAACACAATGTTCAG 420
                      ************************************************************

consensus_4139#0      TTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAA 468
consensus_4139#1      TTGCCTTGGCTAGAAAGTTACTAGCTATATCGATTTAATTCATTCTCAGAAATGCTTTAA 480
                      ************************************************************

consensus_4139#0      ATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTTTTTCCCAGTCAGCCTGTTTTTCG 528
consensus_4139#1      ATACAAGCACCTCACTACTCAGTGTGGACTTCAGTTNTTTCCCAGTCAGCCTGTTTTTCG 540
                      ************************************ ***********************

consensus_4139#0      TACCATTTACGTTTGTGTACCCGTTTTGACCTGTCAGATTCCAGCGATAGATATTGTGAG 588
consensus_4139#1      TACCATTTACGTTTGTGTACCCGTCTTGACCTGTCAGAT--------------------- 579
                      ************************ **************                     

consensus_4139#0      CTGTAATGCCAATTAAATTCTCTTTAATGTTCTGCAAAAA 628
consensus_4139#1      ----------------------------------------