These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence [GTTGATTACTTTCAGATTGATGAATATCATCATCGTCACGGTTTTTAGTGTTAGCATGAATACTACTACTACCAGTAGTCATAGTAGTAGTAGTCGTTGGTGCCGGTATTTCATTGTCATTTGTTTTATACACGCTAATATGAAATACAACTTGTCCACCATTTTGTTGATTTGGATAATTAGAGTTAGGTAATAAATCCGGACTGAGTTTAGCTCGAAGTCTAATACATTTCGGCAGATGTAATGCACGAAGGAGTGTTGAGTATTCAGCAAAAGAGTGAGATCCAGAACTCTCCAAAACTAGATGCTTTAAGAGGTTGGCTTTGCTACATTCAGTTATTTTTGATCCTAATTCTGGACTAGTTGCTAACTGTATGAGCTCAGTCAACCGACAATCAATAAAATGTTGTTTCAAAAATCCAACTGTCTCCGTATCGGGAAAAGGGAAACTTTCTTTTACAACTTTTTGTTCATGATCTGTATCATCATTCATAGGTAATTCCAAATCTATTTCAAAATTCAAGATACGAACTGGTCTATTGGAATTAATAGCTTGATCACTGTCCAGTTCAATAACGGATCGAGAATCGCTGGAGATACACCACATCCTGAAACATCAGTATCAAAATCACACATAGT] [+] EMBL CD156177 [GTTGATTACTTTCAGATTGATGAATATCATCATCGTCACGGTTTTTAGTGTTAGCATGAATACTACTACTACCAGTAGTCATAGTAGTAGTAGTCGTTGGTGCCGGTATTTCATTGTCATTTGTTTTATACACGCTAATATGAAATACAACTTGTCCACCATTTTGTTGATTTGGATAATTAGAGTTAGGTAATAAATCCGGACTGAGTTTAGCTCGAAGTCTAATACATTTCGGCAGATGTAATGCACGAAGGAGTGTTGAGTATTCAGCAAAAGAGTGAGATCCAGAACTCTCCAAAACTAGATGCTTTAAGAGGTTGGCTTTGC ] [+] EMBL CD093835 [ CGGCAGATGTAATGCACGAAGGAGTGTTGAGTTGTCAGCAAAAGAGTGAGATCCAGAACTCTCCAAAACCAGATGCTTTAAGAGGTTGGCTTTGCTACATTCAGTTATTTTTGATCCTAATTCTGGACTAGTTGCTAACTGTATGAGCTCAGTCAACCGACAATCAATAAAATGTTGTTTCAAAAATCCAACTGTCTCCGTATCGGGAAAAGGGAAACTTTCTTTTACAACTTTTTGTTCATGATCTGTATCATCATTCATAGGTAATTCCAAATCTATTTCAAAATTCAAGATACGAACTGGTCTATTGGAATTAATAGCTTGATCACTGTCCAGTTCAATAACGGATCGAGAATCGCTGGAGATACACCACATCCTGAAACATCAGTATCAAAATCACACATAGT] consensusID : consensus_4152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [CGAAATGTATTAAACTTCGAGCTAAACTCAGTCCGGATTTATTACCTAACTCGTAAGTGTTTATTTCATCATGCTTTTCATTTTCATCCCTGAAATAAATCAACATGCGTTTACTCTTTCCCTAGTTTCGTCATGCGTTAGATACATGTAAACCGCAAACAAGTACTTTTTCTCTTTTCAATTAGTTAATAATTACTATTCACAATTACGCACATACATAAATGCACAT] [+] EMBL CD201242 [CGAAATGTATTAAACTTCGAGCTAAACTCAGTCCGGATTTATTACCTAACTCGTAAGTGTTTATTTCATCATGCTTTTCATTTTCATCCCTGAAATAAATCAACATGCGTTTACTCTTTCCCTAGTTTCGTCATGCGTTAGATACATGTAAACCGCAAACAAGTACTTTTTCTCTTTTCAATTAGTTAATAATTACTATTCACAATTACGCACATACATAAATGCACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4152#0 GTTGATTACTTTCAGATTGATGAATATCATCATCGTCACGGTTTTTAGTGTTAGCATGAA 60 consensus_4152#1 ------------------------------------------------------------ consensus_4152#0 TACTACTACTACCAGTAGTCATAGTAGTAGTAGTCGTTGGTGCCGGTATTTCATTGTCAT 120 consensus_4152#1 -------------------CGAAAT-GTATTAAAC-TTCGAGCTAA-ACTCAGTCCGGAT 38 * * * *** ** * ** * ** * * * ** consensus_4152#0 TTGTTTTATA-CACGCTAATATGAAATACAACTTGTCCACCATTTTGTTGATTTGGATAA 179 consensus_4152#1 TTATTACCTAACTCGTAAGTGTTTATTTCATCATGCTTTTCATTTTCATCCCTGAAATAA 98 ** ** ** * ** * * * * * ** * ** ****** * * **** consensus_4152#0 TTAGAGTTAGGTAATAAATCCGGACTGAGTTTAGCTCGAAGTCTAATACATTTCGGCAGA 239 consensus_4152#1 ATCAA--CATGCGTTTACTCTTTCCCTAGTTTCGTCATGCGTTAGATACA---------- 146 * * * * * * ** * ***** * ** ***** consensus_4152#0 TGTAATGCACGAAGGAGTGTTGAGTATTCAGCAAAAGAGTGAGATCCAGAACTCTCCAAA 299 consensus_4152#1 TGTAAACCGCAAACAAGTACTTTTTCTCTTTTCAATTAGTTAA--TAATTACTATTCACA 204 ***** * * ** *** * * * ** *** * * *** * ** * consensus_4152#0 ACTAGATGCTTTAAGAGGTTGGCTTTGCTACATTCAGTTATTTTTGATCCTAATTCTGGA 359 consensus_4152#1 ATTACGCACATACATAAATGCACAT----------------------------------- 229 * ** * * * * * * * consensus_4152#0 CTAGTTGCTAACTGTATGAGCTCAGTCAACCGACAATCAATAAAATGTTGTTTCAAAAAT 419 consensus_4152#1 ------------------------------------------------------------ consensus_4152#0 CCAACTGTCTCCGTATCGGGAAAAGGGAAACTTTCTTTTACAACTTTTTGTTCATGATCT 479 consensus_4152#1 ------------------------------------------------------------ consensus_4152#0 GTATCATCATTCATAGGTAATTCCAAATCTATTTCAAAATTCAAGATACGAACTGGTCTA 539 consensus_4152#1 ------------------------------------------------------------ consensus_4152#0 TTGGAATTAATAGCTTGATCACTGTCCAGTTCAATAACGGATCGAGAATCGCTGGAGATA 599 consensus_4152#1 ------------------------------------------------------------ consensus_4152#0 CACCACATCCTGAAACATCAGTATCAAAATCACACATAGT 639 consensus_4152#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||