These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4159#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence [CCGTCAACACCAATGCAAACAGGTACGTATCCCATTTTCATTTCACTCCGTCTCAACACACAACACCACACATCTCACACATATCCACATTTTCACTCGAACAATCAACAACTCGATCATTCACTCATTCAATCACACACTCAATCACTCCTACAATCTATTACACAATCAATTTATCAACCACTCACACACTCACTCTCACATTCCCACATGCTCACACACTCACACACAACAACACTCACACACAACCATCCTACATTCTCCACTAGCCTCCTAACCAACTAAACTACTCCATCACCAACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACATACACTATCCATCACTCACTACAATCACACTCCTATAAACACTGACTCCAAACGCGTCACGCATTCACACACATACACACACATAATTACTCACTCACACGCTCAATCACTCACTCACTCACTCAATCGATCACTCAATCAATCAATCACTCAATCACACACTCACTCATTTCATCAGTCACTCAGTCAATCACTCAATCCATC] [+] EMBL CD166310 [CCGTCAACACCAATGCAAACAGGTACGTATCCCATTTTCATTTCACTCCGTCTCAACACACAACACCACACATCTCACACATATCCACATTTTCACTCGAACAATCAACAACTCGATCATTCACTCATTCAATCACACACTCAATCACTCCTACAATCTATTACACAATCAATTTATCAACCACTCACACACTCACTCTCACATTCCCACATGCTCACACACTCACACACAACAACACTCACACACAACCATCCTACATTCTCCACTAGCCTCCTAACCAACTAAACTACTCCATCACCAACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACATACACTATCCATCACTCACTACAATCACACTCCTATAAACACTGACTCCAAACGCGTCACGCATTCACACACATACACACACATAATTACTCACTCACACGCTCAATCACTCACTCACTCACTCAATCGATCACTCAATCAATCAATCACTCAA ] [+] EMBL CD136157 [ CTCACATCTGCAACATACACTATCCATCACTCACTACAATCACACTCCTATAAACACTGACTCCAAACGCGTCACGCATTCACACACATACACACACATAATTACTCACTCACACGCTCAATCACTCACTCACTCACTCAATCGATCACTCAATCAATCAATCACTCAATCACACACTCACTCATTTCATCAGTCACTCAGTCAATCACTCAATCCATC] consensusID : consensus_4159#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence [ACACGCCCCTATAAACACTGACTAGCCTCCTAACCAACTAAACTACTCCATCAACAACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACATACACTATCCATCACTCACTACAATCACACTCCT] [-] EMBL CD087178 [ACACGCCCCTATAAACACTGACTAGCCTCCTAACCAACTAAACTACTCCATCAACAACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACATACACTATCCATCACTCACTACAATCACACTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4159#0 CCGTCAACACCAATGCAAACAGGTACGTATCCCATTTTCATTTCACTCCGTCTCAACACA 60 consensus_4159#1 ------------------------------------------------------------ consensus_4159#0 CAACACCACACATCTCACACATATCCACATTTTCACTCGAACAATCAACAACTCGATCAT 120 consensus_4159#1 ------------------------------------------------------------ consensus_4159#0 TCACTCATTCAATCACACACTCAATCACTCCTACAATCTATTACACAATCAATTTATCAA 180 consensus_4159#1 ------------------------------------------------------------ consensus_4159#0 CCACTCACACACTCACTCTCACATTCCCACATGCTCACACACTCACACACAACAACACTC 240 consensus_4159#1 ------------------------------------------------------------ consensus_4159#0 ACACACAACCATCCTACATTCTCCACTAGCCTCCTAACCAACTAAACTACTCCATCACCA 300 consensus_4159#1 --ACACG-CCCCTATAAACACTG-ACTAGCCTCCTAACCAACTAAACTACTCCATCAACA 56 **** ** ** * ** ********************************* ** consensus_4159#0 ACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACAT 360 consensus_4159#1 ACACACTCAATTCCAATCAACACACAAACAATCGAATCACACCACTCACATCTGCAACAT 116 ************************************************************ consensus_4159#0 ACACTATCCATCACTCACTACAATCACACTCCTATAAACACTGACTCCAAACGCGTCACG 420 consensus_4159#1 ACACTATCCATCACTCACTACAATCACACTCCT--------------------------- 149 ********************************* consensus_4159#0 CATTCACACACATACACACACATAATTACTCACTCACACGCTCAATCACTCACTCACTCA 480 consensus_4159#1 ------------------------------------------------------------ consensus_4159#0 CTCAATCGATCACTCAATCAATCAATCACTCAATCACACACTCACTCATTTCATCAGTCA 540 consensus_4159#1 ------------------------------------------------------------ consensus_4159#0 CTCAGTCAATCACTCAATCCATC 563 consensus_4159#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||