cluster # 416

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 416 cluster # 416 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_416#0 length = 624 sequences # 1

consensus_416#1 length = 597 sequences # 1

consensusID : consensus_416#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [GAATTCGGCACGAGGTGAATTATCTGGACCTCATGATGGNGCCTGTATCATGGTCTATATGTCTAGAATGAAAACTGGAGTGGGAAAAAACAAATTGGTGGATTCGATTTTAGTAAGACAGTTCGGAATCTTAAAATTCAAATGTAAGAAGTTGGAAGGAACAGACTCAACGGATACAATCAAGCGTTTTAAACTCGGAAANNNNNNNNNNNATTCGAGATCAGAAAATTTCATTTGGGTAGAATGCCTGGCGTCTACTGGCTCAGTAACTACATTACTTCCACTTACTCGTCTCTCATACCGTTGTCATGTCGGACAGTTCCAACCAGAGGACAAAGTTATTGGCGTTGTAATGAAANNNNNNNNCGAATCGTTCGTAGTTGATATAGGTTGTGCTTCTCCGGCTATTCTCAATTACTTGTCATTCGAGGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAGGTGATGTTCTTTATGCCATGATTACACGAGCCGACAGAGAGGCGGGAAAAGCTTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTGGTATATTGTTACACTGTACGCAAGATTTGGTCAAGCG]

[+] EMBL CD080937             [GAATTCGGCACGAGGTGAATTATCTGGACCTCATGATGGNGCCTGTATCATGGTCTATATGTCTAGAATGAAAACTGGAGTGGGAAAAAACAAATTGGTGGATTCGATTTTAGTAAGACAGTTCGGAATCTTAAAATTCAAATGTAAGAAGTTGGAAGGAACAGACTCAACGGATACAATCAAGCGTTTTAAACTCGGAAANNNNNNNNNNNATTCGAGATCAGAAAATTTCATTTGGGTAGAATGCCTGGCGTCTACTGGCTCAGTAACTACATTACTTCCACTTACTCGTCTCTCATACCGTTGTCATGTCGGACAGTTCCAACCAGAGGACAAAGTTATTGGCGTTGTAATGAAANNNNNNNNCGAATCGTTCGTAGTTGATATAGGTTGTGCTTCTCCGGCTATTCTCAATTACTTGTCATTCGAGGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAGGTGATGTTCTTTATGCCATGATTACACGAGCCGACAGAGAGGCGGGAAAAGCTTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTGGTATATTGTTACACTGTACGCAAGATTTGGTCAAGCG]




>consensus_416#0
GAATTCGGCACGAGGTGAATTATCTGGACCTCATGATGGNGCCTGTATCATGGTCTATAT
GTCTAGAATGAAAACTGGAGTGGGAAAAAACAAATTGGTGGATTCGATTTTAGTAAGACA
GTTCGGAATCTTAAAATTCAAATGTAAGAAGTTGGAAGGAACAGACTCAACGGATACAAT
CAAGCGTTTTAAACTCGGAAANNNNNNNNNNNATTCGAGATCAGAAAATTTCATTTGGGT
AGAATGCCTGGCGTCTACTGGCTCAGTAACTACATTACTTCCACTTACTCGTCTCTCATA
CCGTTGTCATGTCGGACAGTTCCAACCAGAGGACAAAGTTATTGGCGTTGTAATGAAANN
NNNNNNCGAATCGTTCGTAGTTGATATAGGTTGTGCTTCTCCGGCTATTCTCAATTACTT
GTCATTCGAGGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAGGTGATGTTCTTTA
TGCCATGATTACACGAGCCGACAGAGAGGCGGGAAAAGCTTGTGGAATGGGTATTCTTGG
TCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTGGTATATTGTTACA
CTGTACGCAAGATTTGGTCAAGCG

consensusID : consensus_416#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [GGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAGGTGATGTTCTTTATGCCATGATTACACGAGCCGACAGAGATTTAGAAATTGAATTGTCATGTGTTGATGAGGCGGGAAAAGCTTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTGGTATATTGTTACACTGTACGCAAGATTTGGTCAGGCGGTTATGCAATCAAGATGAATTCCCTCTACTAAAACTTTTATCTAAGGTGTATCCGTTTGAAATATTCTTAGGTGCAAATGGACGAATATGGTTAACAGCTGGTTCTGCTAGAGAAATAATGATATTAGCCAATGCAATAGCCATTGCTGAACATATATCAGCTAGTGAATGTTGTCAATTAGCTAAAGAACTTTGTTAAGTATTTTTTTTACATTTTGATAAAACGTTTTATTTTCTTTAAATGAATTTTGAAAATTGTACATATTTATTGATATTGTACATTTGTAAGTCTATTTTGTATCTAATAGATTGAAGTTTACTTTGTTTTAAAAATTTGTTCATTGAGAAATAATACGTGAAAGTAAAATCGTT]

[-] EMBL CD074771             [GGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAGGTGATGTTCTTTATGCCATGATTACACGAGCCGACAGAGATTTAGAAATTGAATTGTCATGTGTTGATGAGGCGGGAAAAGCTTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTGGTATATTGTTACACTGTACGCAAGATTTGGTCAGGCGGTTATGCAATCAAGATGAATTCCCTCTACTAAAACTTTTATCTAAGGTGTATCCGTTTGAAATATTCTTAGGTGCAAATGGACGAATATGGTTAACAGCTGGTTCTGCTAGAGAAATAATGATATTAGCCAATGCAATAGCCATTGCTGAACATATATCAGCTAGTGAATGTTGTCAATTAGCTAAAGAACTTTGTTAAGTATTTTTTTTACATTTTGATAAAACGTTTTATTTTCTTTAAATGAATTTTGAAAATTGTACATATTTATTGATATTGTACATTTGTAAGTCTATTTTGTATCTAATAGATTGAAGTTTACTTTGTTTTAAAAATTTGTTCATTGAGAAATAATACGTGAAAGTAAAATCGTT]




>consensus_416#1
GGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAGGTGATGTTCTTTATGCCATGAT
TACACGAGCCGACAGAGATTTAGAAATTGAATTGTCATGTGTTGATGAGGCGGGAAAAGC
TTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCG
GTCTGGTGGTATATTGTTACACTGTACGCAAGATTTGGTCAGGCGGTTATGCAATCAAGA
TGAATTCCCTCTACTAAAACTTTTATCTAAGGTGTATCCGTTTGAAATATTCTTAGGTGC
AAATGGACGAATATGGTTAACAGCTGGTTCTGCTAGAGAAATAATGATATTAGCCAATGC
AATAGCCATTGCTGAACATATATCAGCTAGTGAATGTTGTCAATTAGCTAAAGAACTTTG
TTAAGTATTTTTTTTACATTTTGATAAAACGTTTTATTTTCTTTAAATGAATTTTGAAAA
TTGTACATATTTATTGATATTGTACATTTGTAAGTCTATTTTGTATCTAATAGATTGAAG
TTTACTTTGTTTTAAAAATTTGTTCATTGAGAAATAATACGTGAAAGTAAAATCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_416#0      GAATTCGGCACGAGGTGAATTATCTGGAC-CTCATGATGGNGCCTGTATCATGGTCTATA 59
consensus_416#1      GGGTTCTTC-TAAAAAGAATCGTCCTGACATTCATGCAGGTG--------ATGTTCTTTA 51
                     *  ***  *   *   ****  **  ***  *****  ** *        *** *** **

consensus_416#0      TGTCTAGAATGAAAACTGGAGTGGGAAAAAACAAATTGGTGGATTCGATTTTAGTAAGAC 119
consensus_416#1      TGCCATGATTACACGAGCCGACAGAGATTTAGAAATTGAATTGTCATGTGTTGATGAGGC 111
                     ** *  ** *  *          *  *   * ******     *    * **  * ** *

consensus_416#0      AGTTCGGAATCTTAAAATTCAAATGTAAGAAGTTGGAAGGAACA-GACTCAACGGATACA 178
consensus_416#1      GG--GAAAAGCTTGTGGAATGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAAT 169
                      *     ** ***          * *     ** *  * ****  *   *    * **  

consensus_416#0      ATCAAGCGTTTTAAACTCGGAAANNNNNNNNNNNATTCGAGATCAGAAAATTTCATTTGG 238
consensus_416#1      GCTGGAGGTC---GGTCTGGTGGTATATTGTTACACT---GTACGCAAGATTTGGTCAGG 223
                            **         **              * *   *  *  ** ****  *  **

consensus_416#0      GTAGAATGC--CTGGCGTCTACTGGCTCAGTAACTACATTACTTCCA--CTTACTCGTCT 294
consensus_416#1      CGGTTATGCAATCAAGATGAATTCCCTCTACTAAAACTTTTATCTAAGGTGTATCCGTTT 283
                          ****        *  * *  ***    *  ** **  *   *    **  *** *

consensus_416#0      CTCATACCGTT--GTCATGTCGGACAGTTCCAACCAGAGGACAAAGTTATTGGCGTTGTA 352
consensus_416#1      GAAATATTCTTAGGTGCAAATGGACGAATATGGTTAACAGCTGGTTCTGCTAGAGAAATA 343
                        ***   **  **      ****   *      *   *       *  * * *   **

consensus_416#0      ATGAAANNNNNNNNCGAATCGTTCGTAGTTGA-TATAGGTTGTGCTTCTCCGGCTATTCT 411
consensus_416#1      ATGATATTAGCCAATGCAATAGCCATTGCTGAACATATATCA-GCTAGT--GAATGTTGT 400
                     **** *         * *     * * * ***  ***  *   ***  *  *  * ** *

consensus_416#0      CAATTACTTGTCATTCGAGGGTTCTTCTAAAAAGAATCGTCCTGACATTCATGCAG---G 468
consensus_416#1      CAATTAGCTA------AAGAACTTTGTTA---AGTATTTTTTTTACATTTTGATAAAACG 451
                     ******  *        **   * *  **   ** **  *  * *****     *    *

consensus_416#0      TGATGTTCTTTATGCCATGATTACACGAGCCG-ACAGAGAGGCGGGAAAAGCTTGTGGAA 527
consensus_416#1      TTTTATTTTCTTTAAATGAATTTTGAAAATTGTACATATTTATTGATATTGTACATTTG- 510
                     *  * ** * * *      ***     *   * *** *      *  *  *    *    

consensus_416#0      TGGGTATTCTTGGTCGTCATGAACCTGGAACTGTTGGTAATGCTGGAGGTCGGTCTGGTG 587
consensus_416#1      TAAGTCTATTTTGTATCTAATAGATTGAAGTT-TACTTTGTTTTAAAAATTTGTTCATTG 569
                     *  ** *  ** **    *  *   ** *  * *   *  *  *  *  *  **    **

consensus_416#0      GTATATTGTTACACTGTACGCAAGATTTGGTCAAGCG 624
consensus_416#1      AGA-AATAATACG-TGAAAGTAAAATC--GTT----- 597
                       * * *  ***  ** * * ** **   **