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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence
[GGTACTAAATAAACATGTGATTTGGTAGGTGGTAGGTCATCCGGAATTACAAGAGCCAACTTAATTAAATGGTTAGCCTATTTAGTTTTTTGCTAACCATCATGATGAGTAACAATTGGCTACATAAGAACCGTTGTCTAGGTTTTTTGTAAAATTGGTACTTCGACAGTCATTTTTCCTATTGAATTGCATAATGATTCTGTTCGTCACTTTGTACATGTTCTAAAGTTGACGCGTAATCAAAACGTTACTGAATACATTCACTAAACCCCATTGCACTTTCGAATATCCTTAGGATGAAGCCAGGGCAATAAAAAAAACAAGCTATTAAATAGAGTCAAAATGTTTTCTCAGCTCAACAATATTTCGCTGATTTTTTTATGAATCCCTGAAATATATAGAAGTTACCTAGACATTAGTTTACAATCCGGAGATTATTTGAAATGAAGCTTTGAAATATAAAACATGTACTTTGCATCTTGAGATAATATTATTTAATCGTCAATAAAGAAATAATATACACATATTTACATATACATAGTTACTGCAATATGGTTCCAACAGTCGCAGAATCTACTTCGTTTACGATCGACTTCACTTCTTCAATAATTCCTTTCCTCGAGATAAGCTGCTTTTTATAAACTTCAATTGCCTCAGTAACCTTTTTGTTTAGTTCTTGTATAGAACACAATGCTTGACGCTTTGTTTCTTTAAAATCAGTTTCGTGTGCGATTGTTGGTGCGCTGGGAGGAATTTGAGATCTGCTCATCAACGCTCGATAAAAAGACGGAGAAGGATCAACGAAAACCAT]
[+] EMBL CD084643 [GGTACTAAATAAACATGTGATTTGGTAGGTGGTAGGTCATCCGGAATTACAAGAGCCAACTTAATTAAATGGTTAGCCTATTTAGTTTTTTGCTAACCATCATGATGAGTAACAATTGGCTACATAAGAACCGTTGTCTAGGTTTTTTGTAAAATTGGTACTTCGACAGTCATTTTTCCTATTGAATTGCATAATGATTCTGTTCGTCACTTTGTACATGTTCTAAAGTTGACGCGTAATCAAAACGTTACTGAATACATTCACTAAACCCCATTGCACTTTCGAATATCCTTAGGATGAAGCCAGGGCAATAAAAAAAACAAGCTATTAAATAGAGTCAAAATGTTTTCTCAGCTCAACAATATTTCGCTGATTTTTTTATGAATCCCTGAAATATATAGAAGTTACCTAGACATTAGTTTACAATCCGGAGATTATTTGAAATGAAGCTTTGAAATATAAAACATGTACTTTGCATCTTGAGATAATATTATTTAATCGTCAATAAAGAAATAATATACACATATTTACATATACATAGTTACTGCAATATGGTTCCAACAGTCGCAGAATCTACTTCGTT ]
[-] EMBL CD084662 [ AAATAGAGTCAGAATGTTTTCTCAGCTCAACAATAGTTCGCTGATTTTTTTATGAATCCCTGAAATATATAGAAGTTACCTAGGCATTAGTTTACAATCCGGAGATTATTTGAAATGAAGCTTTGAAATATAAAACATGTACTTTGCATCTTGAGATAATATTATTTAATCGTCAATAAAGAAATAATATACACATATTTACATATACATAGTTACTGCAATATGGTTCCAACAGTCGCAGAATCTACTTCGTTTACGATCGACTTCACTTCTTCAATAATTCCTTTCCTCGAGATAAGCTGCTTTTTATAAACTTCAATTGCCTCAGTAACCTTTTTGTTTAGTTCTTGTATAGAACACAATGCTTGACGCTTTGTTTCTTTAAAATCAGTTTCGTGTGCGATTGTTGGTGCGCTGGGAGGAATTTGAGATCTGCTCATCAACGCTCGATAAAAAGACGGAGAAGGATCAACGAAAACCAT]
consensusID : consensus_4181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[CAAATAAATCATTCACGAGAAAAGCTGCATTTAAAAACATCGATTGCCTCAGTAACCTTTTGTTTAGATCTGTAAAGAACACAATGCTTGACGCTTTGTATCTTTAAATCAGTTTCGTGTGCGATTGTATGTGCGCTGGGAGGAATTTTAGATCTGCTCATCAACGCTCGATAAAAAGACGGAGAAGGATCAACGAAAACCAATTCGTCGTAGATCTCTCGTACTAAGCTCTTATGACCCATCATTATTTCATGGTCACAATGAAACAACTTAATTAGATGAGTTATTATCAGGGG]
[-] EMBL CD157937 [CAAATAAATCATTCACGAGAAAAGCTGCATTTAAAAACATCGATTGCCTCAGTAACCTTTTGTTTAGATCTGTAAAGAACACAATGCTTGACGCTTTGTATCTTTAAATCAGTTTCGTGTGCGATTGTATGTGCGCTGGGAGGAATTTTAGATCTGCTCATCAACGCTCGATAAAAAGACGGAGAAGGATCAACGAAAACCAATTCGTCGTAGATCTCTCGTACTAAGCTCTTATGACCCATCATTATTTCATGGTCACAATGAAACAACTTAATTAGATGAGTTATTATCAGGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4181#0 GGTACTAAATAAACATGTGATTTGGTAGGTGGTAGGTCATCCGGAATTACAAGAGCCAAC 60
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 TTAATTAAATGGTTAGCCTATTTAGTTTTTTGCTAACCATCATGATGAGTAACAATTGGC 120
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 TACATAAGAACCGTTGTCTAGGTTTTTTGTAAAATTGGTACTTCGACAGTCATTTTTCCT 180
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 ATTGAATTGCATAATGATTCTGTTCGTCACTTTGTACATGTTCTAAAGTTGACGCGTAAT 240
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 CAAAACGTTACTGAATACATTCACTAAACCCCATTGCACTTTCGAATATCCTTAGGATGA 300
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 AGCCAGGGCAATAAAAAAAACAAGCTATTAAATAGAGTCAAAATGTTTTCTCAGCTCAAC 360
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 AATATTTCGCTGATTTTTTTATGAATCCCTGAAATATATAGAAGTTACCTAGACATTAGT 420
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 TTACAATCCGGAGATTATTTGAAATGAAGCTTTGAAATATAAAACATGTACTTTGCATCT 480
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 TGAGATAATATTATTTAATCGTCAATAAAGAAATAATATACACATATTTACATATACATA 540
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 GTTACTGCAATATGGTTCCAACAGTCGCAGAATCTACTTCGTTTACGATCGACTTCACTT 600
consensus_4181#1 ------------------------------------------------------------
consensus_4181#0 CTTCAATAATTCCTTTCCTCGAGATAAGCTGCTTTTTATAAACTTCAATTGCCTCAGTAA 660
consensus_4181#1 --CAAATAAATCATT--CACGAGAAAAGCTGCATTT-AAAAACATCGATTGCCTCAGTAA 55
***** ** ** * ***** ******* *** * **** ** *************
consensus_4181#0 CCTTTTTGTTTAGTTCTTGTATAGAACACAATGCTTGACGCTTTGTTTCTTTAAAATCAG 720
consensus_4181#1 CCTTTT-GTTTAGATCT-GTAAAGAACACAATGCTTGACGCTTTGTATCTTTAAA-TCAG 112
****** ****** *** *** ************************ ******** ****
consensus_4181#0 TTTCGTGTGCGATTGTTGGTGCGCTGGGAGGAATTTGAGATCTGCTCATCAACGCTCGAT 780
consensus_4181#1 TTTCGTGTGCGATTGTATGTGCGCTGGGAGGAATTTTAGATCTGCTCATCAACGCTCGAT 172
**************** ****************** ***********************
consensus_4181#0 AAAAAGACGGAGAAGGATCAACGAAAACCAT----------------------------- 811
consensus_4181#1 AAAAAGACGGAGAAGGATCAACGAAAACCAATTCGTCGTAGATCTCTCGTACTAAGCTCT 232
******************************
consensus_4181#0 ------------------------------------------------------------
consensus_4181#1 TATGACCCATCATTATTTCATGGTCACAATGAAACAACTTAATTAGATGAGTTATTATCA 292
consensus_4181#0 ----
consensus_4181#1 GGGG 296
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||