These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACACTGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTACGTTTGATTCCAGCCCCTCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAAAGCTTCTTCAAATGGCTGGTATCGAAGATGTCTACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAATTTCGCCAAAGCAACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTTATGGAACGTGGTTCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTTAACAAAATTGCTAAAGAAGTTTGAATGATAATATATATT] [+] EMBL CD080063 [CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACACTGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTACGTTTGATTCCAGCCCCTCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAAAGCTTCTTCAAATGGCTGGTATCGAAGATGTCTACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAATTTCGCCAAAGCAACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTTATGGAACGTGGTTCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTTAACAAAATTGCTAAAGAAGTTTGAATGATAATATATATT] consensusID : consensus_4200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 434 fasta sequence [CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATACATTTCTTCCCTTTTTGACACCAAATACATGCCATATTCGATGTCTTTGCACTTTGACATGTTTCACTTGTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAATAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAAAACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTCACATTCAGATATGTGCACA] [-] EMBL CD135565 [CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATACATTTCTTCCCTTTTTGACACCAAATACATGCCATATTCGATGTCTTTGCACTTTGACATGTTTCACTTGTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAATAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAAAACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTCACATTCAGATATGTGCACA] [+] EMBL CD154635 [ GTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAGTAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAATACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4200#0 CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAA 60 consensus_4200#1 -------------------CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATAC 41 * * *** * * * * * * * * * ** consensus_4200#0 GCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACAC 120 consensus_4200#1 ATTTCTTCCCTTTTTGACACCAAATACATGCCATATTCGATGTCTTTGCACTTTG-ACA- 99 * ** * ** ** * * ** * * *** consensus_4200#0 TGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTAC--GTTTGATTCCAGCC 178 consensus_4200#1 TGTTTCACTTGTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTT 159 **** ** * * ** * * ** **** ** * * * *** * ** consensus_4200#0 C---CTCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAA---AGCTTCTTCAAATG 232 consensus_4200#1 AAAGTTAATGAATAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTG 219 * ** * * * * * * *** * ** * * ** consensus_4200#0 GC--TGGTATCGAAGATGTCT-ACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAAT 289 consensus_4200#1 ATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCAT 279 ** * ** ** * * ** * *** * * * * * *** ** consensus_4200#0 TTCGCCAAAGCAACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTT- 348 consensus_4200#1 CATGC-AAAACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTG 338 ** *** * *** * * ** * * * * * * ** ** consensus_4200#0 -ATGGAA----CGTGGTTCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTT 403 consensus_4200#1 AATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTC 398 *** ** * ** * **** ** **** **** * * *** * consensus_4200#0 AACAA-AATTGCTAAAGAAGTTTGAATGATAATATATATT 442 consensus_4200#1 ACTTTTAATAACTGTTCACATTCAGATATGTGCACA---- 434 * *** ** * ** ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||