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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4200 cluster # 4200       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4200#0 length = 442 sequences # 1  
consensus_4200#1 length = 434 sequences # 2  

consensusID : consensus_4200#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence
                              [CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACACTGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTACGTTTGATTCCAGCCCCTCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAAAGCTTCTTCAAATGGCTGGTATCGAAGATGTCTACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAATTTCGCCAAAGCAACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTTATGGAACGTGGTTCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTTAACAAAATTGCTAAAGAAGTTTGAATGATAATATATATT]

[+] EMBL CD080063             [CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACACTGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTACGTTTGATTCCAGCCCCTCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAAAGCTTCTTCAAATGGCTGGTATCGAAGATGTCTACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAATTTCGCCAAAGCAACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTTATGGAACGTGGTTCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTTAACAAAATTGCTAAAGAAGTTTGAATGATAATATATATT]


>consensus_4200#0 CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAA GCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACAC TGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTACGTTTGATTCCAGCCCC TCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAAAGCTTCTTCAAATGGCTGGTAT CGAAGATGTCTACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAATTTCGCCAAAGC AACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTTATGGAACGTGGT TCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTTAACAAAATTGCTAAAGA AGTTTGAATGATAATATATATT



consensusID : consensus_4200#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 434
fasta sequence
                              [CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATACATTTCTTCCCTTTTTGACACCAAATACATGCCATATTCGATGTCTTTGCACTTTGACATGTTTCACTTGTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAATAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAAAACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTCACATTCAGATATGTGCACA]

[-] EMBL CD135565             [CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATACATTTCTTCCCTTTTTGACACCAAATACATGCCATATTCGATGTCTTTGCACTTTGACATGTTTCACTTGTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAATAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAAAACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTCACATTCAGATATGTGCACA]
[+] EMBL CD154635             [                                                                                                             GTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAGTAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAATACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTC                   ]


>consensus_4200#1 CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATACATTTCTTCCCTTTTTGACA CCAAATACATGCCATATTCGATGTCTTTGCACTTTGACATGTTTCACTTGTATTGTATTG CGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTTAAAGTTAATGAATAAAAGAAC AGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTGATGGTGATTTCTGAGTTCAGT GACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCATCATGCAAAACTCAGTACACTT CAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTGAATGAAATTACCTTGAGTACAA AGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTCACTTTTAATAACTGTTCACATT CAGATATGTGCACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4200#0      CAGGCTAAGCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCATTCAGGCTAA 60
consensus_4200#1      -------------------CACTTTCAAGCCATGAGTGTTCTGATCGTTACTTTCTATAC 41
                                           * *  ***  * *  *  *  * *  * * *     ** 

consensus_4200#0      GCTGTCAATAATTCCTGTAAGGAAAGGATACTGGGGTAATCAAATTGGTAAACCACACAC 120
consensus_4200#1      ATTTCTTCCCTTTTTGACACCAAATACATGCCATATTCGATGTCTTTGCACTTTG-ACA- 99
                        *        **     *   **   ** *     *       ** * *      *** 

consensus_4200#0      TGTTCCATGTAAAGTGACTGGAAAATGTGGTTCTGTGTCAGTAC--GTTTGATTCCAGCC 178
consensus_4200#1      TGTTTCACTTGTATTGTATTGCGAACAAATTTCTATGGAAAGAATAGGCTGAATTCATTT 159
                      **** **  *  * **  * *  **     **** **  *  *   *  *** * **   

consensus_4200#0      C---CTCGTGGAACAGGCATTGTTGGTGCCCCAGTTCCCAAAA---AGCTTCTTCAAATG 232
consensus_4200#1      AAAGTTAATGAATAAAAGAACAGAGAGATAAGAAACCTGTAAATATAACTCAATGACGTG 219
                           *  ** *  *   *     *       *   *   ***   * **   * *  **

consensus_4200#0      GC--TGGTATCGAAGATGTCT-ACACAAGTGCTCGTGGTCAGACCTCAACCTTGGGAAAT 289
consensus_4200#1      ATGGTGATTTCTGAGTTCAGTGACTTATCCATTCGGTGGTAAATGGTCAACATGGTGCAT 279
                          ** * **  ** *   * **  *     ***  *  * *     * * ***   **

consensus_4200#0      TTCGCCAAAGCAACATACGCAGCCATACGAGCTACCTATGAGTATCTAACACCTGATTT- 348
consensus_4200#1      CATGC-AAAACTCAGTACACTTCAATTTCTCTTCTATTTCAAGACTGCATTTTTGGATTG 338
                         ** *** *    *** *  * **      *   * * *  *    *    **  ** 

consensus_4200#0      -ATGGAA----CGTGGTTCCAAAATCAAAACACATATTTGTTGAGTATGCTGGATTTCTT 403
consensus_4200#1      AATGAAATTACCTTGAGTACAAAGAACAAGTGACGATTTTTTGACAAGGGGAAATTGTTC 398
                       *** **    * **  * ****    **      **** ****  * *    ***  * 

consensus_4200#0      AACAA-AATTGCTAAAGAAGTTTGAATGATAATATATATT 442
consensus_4200#1      ACTTTTAATAACTGTTCACATTCAGATATGTGCACA---- 434
                      *     ***  **    *  **   **      * *    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)