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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 681 fasta sequence
[CGGTATTGTGACTTTGACTTCGCAGGTGCCGAGTTATATTTAATGGCTGCGAACGACTCGGCCAAGCCAAAGGATCCTCCTGAAGTTATAGTAGATGTTACAAGAAAACGAGAGTTTCTCCGTGGACGGTTTTTGGGGAAGGGAGGATTCGCAAAATGCTATGAACTTGTTGATAAAAAAACAGGGGAAAAGTACGCCGGTAAAGTTATTAACAAGTCAGCTTTGGTCAAAGAATCCCAAAAAGAAAAAATGCGCCAAGAGATCAGTATTCATCGTTCTCTAAAACATGAAAATGTCGTGAGATTCTATGGAAATTTCGAGGATAGTGAATTCATATACATTNTGCTTGAACTNTGTAACCGCAGATCGCTTTTAGAATTACATAAGCGAAGAAAGTATGTCACTGAACCAGAGGCCAGGTATTTTATGAAACAAATTGTCCATGGCTGTCAATACCTTCATCAAAATAAGGTCATGCATAGAGATCTTAAGCTGGCCAACCTTTTCCTCGACGACAACCTAAAAATAAAAATAGGAGACTTCGGACTTGCCTCGAGGATCAGTCATGAGGGTGAGAAGAAAAAAACGTTGTGTGGTACTCCCAACTATATTGCTCCCGAAATTTTGAGTAAAGGCGGACACAGCTTCGAAGTGGACTCATGGTCTCTTGGTTGTATACTT]
[+] EMBL AI976091 [CGGTATTGTGACTTTGACTTCGCAGGTGCCGAGTTATATTTAATGGCTGCGAACGACTCGGCCAAGCCAAAGGATCCTCCTGAAGTTATAGTAGATGTTACAAGAAAACGAGAGTTTCTCCGTGGACGGTTTTTGGGGAAGGGAGGATTCGCAAAATGCTATGAACTTGTTGATAAAAAAACAGGGGAAAAGTACGCCGGTAAAGTTATTAACAAGTCAGCTTTGGTCAAAGAATCCCAAAAAGAAAAAATGCGCCAAGAGATCAGTATTCATCGTTCTCTAAAACATGAAAATGTCGTGAGATTCTATGGAAATTTCGAGGATAGTGAATTCATATACATTNTGCTTGAACTNTGTAACCGCAGATCGCTTTTAGAATTACATAAGCGAAGAAAGTATG ]
[+] EMBL AI975016 [ AGGATTCGCAAAATGCTATGAACTTGTTGATAAAAAAACAGGGGAAAAGTACGCCGGTAAAGTTATTAACAAGTCAGCTTTGGTCAAAGAATCCCAAAAAGAAAAAATGCGCCAAGAGATCAGTATTCATCGTTCTCTAAAACATGAAAATGTCGTGAGATTCTATGGAAATTTCGAGGATAGTGAATTCATATACATTTTGCTTGAACTTTGTAACCGCAGATCGCTTTTAGAATTACATAAGCGAAGAAAGTATGTCACTGAACCAGAGGCCAGGTATTTTATGAAACAAATTGTCCATGGCTGTCAATACCTTCATCAAAATAAGGTCATGCATAGAGATCTTAAGCTGGCCAACCTTTTCCTCGACGACAACCTAAAAATAAAAATAGGAGACTTCGGACTTGCCTCGAGGATCAGTCATGAGGGTGAGAAGAAAAAAACGTTGTGTGGTACTCCCAACTATATTGCTCCCGAAATTTTGAGTAAAGGCGGACACAGCTTCGAAGTGGACTCATGGTCTCTTGGTTGTATACTT]
consensusID : consensus_4202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[TGGGCACGAGGCTTGCCTCGAGGATCAGTCATGAGGGTGAGAATAAAAAAACGTTGTGTGGTCCTCCCAACTATATTGCTCCCGAAATTTTGAGTAAAGGCGGACACAGCTTCGAAGTGGACTCATGGTCTCTTGGTTGTATACTTTATACTCTTCTAGTCGGGAGTCCTCCTTTTGAAACTACGAAACTGGAGGAAACGTATGCACGCATTAAACAAAATGAGTACCGCATTCCGATTCGTGTGTCAACGAATGCCTCAATGCTCATCCGCTCACTTTTACATGCCGATCCGGAAAGAAGACCAAATATGTTCAATGTACTCGACCATGATTTCTTTAAAGACTTTACACCTAATGGTCTTCCTGTGAGCTGTCTTTCAACGTGCCCCAGATTTGATACTATGCATCGACCTCAAACCGGACGTCGCCCATTGTCTGACATCAACCCGGTTGAGGATGTTCCTATTACCAGTGGCGGTGGTGCCCTTGGTAATGTCGGCGGTGCTGCAGTTGATAAAGCCGTTCAGCCAGATGACTGCTGGCTTGGGTTACTTAAGCACAAATTAGGTCGTGTATTAGAGGAACCCAAGGAATTTGATGACTCTTCACCANAAGCAATGGAAGAAAGTGAAG]
[+] EMBL CD081351 [TGGGCACGAGGCTTGCCTCGAGGATCAGTCATGAGGGTGAGAATAAAAAAACGTTGTGTGGTCCTCCCAACTATATTGCTCCCGAAATTTTGAGTAAAGGCGGACACAGCTTCGAAGTGGACTCATGGTCTCTTGGTTGTATACTTTATACTCTTCTAGTCGGGAGTCCTCCTTTTGAAACTACGAAACTGGAGGAAACGTATGCACGCATTAAACAAAATGAGTACCGCATTCCGATTCGTGTGTCAACGAATGCCTCAATGCTCATCCGCTCACTTTTACATGCCGATCCGGAAAGAAGACCAAATATGTTCAATGTACTCGACCATGATTTCTTTAAAGACTTTACACCTAATGGTCTTCCTGTGAGCTGTCTTTCAACGTGCCCCAGATTTGATACTATGCATCGACCTCAAACCGGACGTCGCCCATTGTCTGACATCAACCCGGTTGAGGATGTTCCTATTACCAGTGGCGGTGGTGCCCTTGGTAATGTCGGCGGTGCTGCAGTTGATAAAGCCGTTCAGCCAGATGACTGCTGGCTTGGGTTACTTAAGCACAAATTAGGTCGTGTATTAGAGGAACCCAAGGAATTTGATGACTCTTCACCANAAGCAATGGAAGAAAGTGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4202#0 CGGTATTGTGACTTTGACTTCGCAGGTGCCGAGTTATATTTAATGGCTGCGAACG--ACT 58
consensus_4202#1 TGGGCACGAGGCTT--GCCTCGAGGATCAGTCATGAGGGTGAGAATAAAAAAACGTTGTG 58
** * * *** * *** * * * * * * ****
consensus_4202#0 CGGCCAAGCCAA--AGGATCCTCCTGAAGTTAT-AGTAGATGTTACAAGAAAACGAGAGT 115
consensus_4202#1 TGGTCCTCCCAACTATATTGCTCCCGAAATTTTGAGTAAAGGCGGACACAGCTTCGAAGT 118
** * **** * * **** *** ** * **** * * * * ***
consensus_4202#0 TTCTCCGTGGACGGTTTTTGGGGAAGGGAGGATTCGCAAAAT--GCTATGAACTTGTTGA 173
consensus_4202#1 GGACTCATGGTCTCTTGGTTGTATACTTTATACTCTTCTAGTCGGGAGTCCTCCTTTTGA 178
* *** * ** * * * * ** * * * * * * ****
consensus_4202#0 ---TAAAAAAACAGGGGAAAAGTACGCCGGTAAAGTTATTAACAAGTCAGCTTTGGTCAA 230
consensus_4202#1 AACTACGAAACTGGAGGAAACGTATGCACGCA---TTA--AACAAAATGAGTACCGCATT 233
** *** * ***** *** ** * * *** ***** * *
consensus_4202#0 AGAATCCCAAAAAGAAAAAATGCGCCAAGAGATCAGTATTCATCGTTCTCTAA-AACATG 289
consensus_4202#1 CCGATTCGTGTGTCAACGAATGCCTCAATGCTCATCCGCTCACTTTTACATGCCGATCCG 293
** * ** ***** *** *** ** * * *
consensus_4202#0 AAAATGTCGTGAGATTCTATGGAAAT-TTCGAGGATAGTGAATTCATATACATTNTGCTT 348
consensus_4202#1 GAAAGAAGACCAAATATGTTCAATGTACTCGACCATGATTTCTTTAAAGACTTTACACCT 353
*** * ** * * * **** ** * ** * * ** ** * *
consensus_4202#0 GAACTNTGTAACCGCAGATCGCTTTTAGAATTACATAAGCGAAGAAAGTATGT-----CA 403
consensus_4202#1 -AATGGTCTTCCTGTGAGCTGTCTTTCAACGTGCCCCAGATTTGATACTATGCATCGACC 412
** * * * * * *** * * * ** ** * **** *
consensus_4202#0 CTGAACCAGAGGCCAGGTATTTTATGAAACAAATTGTCCATGGCTGTCAATACCTTCATC 463
consensus_4202#1 TCAAACCGGACGTCGCCCATTGTCTGACATCAACC-----CGGTTGAGGATGTTCCTATT 467
**** ** * * *** * *** * ** ** ** ** **
consensus_4202#0 AAAATAAGGTCATGCATAGAGATCTTAAGCTGGCCAACCTTTTCCTCGACGACAACCTAA 523
consensus_4202#1 ACCA----GTGGCG-GTGGTGCCCTTGGTAATGTCGGCGGTGCTGCAGTTGATAA---AG 519
* * ** * * * * *** * * * * * ** ** *
consensus_4202#0 AAATAAAAATAGGAGACTTCGGACTTGCCTCGAG-GATCAGTCATGAGGGTGAGAAGAAA 582
consensus_4202#1 CCGTTCAGCCAGATGACTGCTGGCTTGGGTTACTTAAGCACAAATTAGGTCGTGTATTAG 579
* * ** **** * * **** * * ** ** *** * * * *
consensus_4202#0 AAAACGTTGTGTGGTACTCCCAACTATATTGCTCCCGAAATTTTGAGTAAAGGCGGACAC 642
consensus_4202#1 AGGAACCCAAGGAAT----TTGATGACTCTTCACCANAAGCAATGGAAGAAAGTGAAG-- 633
* * * * * * * * ** ** ** ** * * *
consensus_4202#0 AGCTTCGAAGTGGACTCATGGTCTCTTGGTTGTATACTT 681
consensus_4202#1 ---------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||