These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence [TGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGGGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGAGCGTGATCGTGCCCTAGACATGTTTCGTGAAGGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGGGTGTGGTGAGTTTTGGCATTCTGGAGTCGTTGGAGCAATTGGCTCCATTATTGGCCTCTGGTTAAACTGGTATAATTTGGTTTCGCCAATCATTTGGTCGTGTATTGGACACAGATTATGTCTGGTCGACCGTCTTAACAGTTGGATTGGTACATTGGCTATTAGTGTAACGAACGATTTGGTGATATAAGAGAGTCACATGAACATCTTGTGTTAAATCATCCAACCTCAATCATCTCGTTCCTCTGGATACGTGTTGGTCCTAAGCTGGTTTTTGTAATTGGTTGGTGAACAAAGTTTCGTTCATTTGAATATTTGGATCGGTAAGCTTGGAACTATGTATTCGTGTCANAATTCTGGG] [+] EMBL CD123590 [TGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGGGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGAGCGTGATCGTGCCCTAGACATGTTTCGTGAAGGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGGGTGTGGTGAGTTTTGGCATTCTGGAGTCGTTGGAGCAATTGGCTCCATTATTGGCCTCTGGTTAAACTGGTATAATTTGGTTTCGCCAATCATTTGGTCGTGTATTGGACACAGATTATGTCTGGTCGACCGTCTTAACAGTTGGATTGGTACATTGGCTATTAGTGTAACGAACGATTTGGTGATATAAGAGAGTCACATGAACATCTTGTGTTAAATCATCCAACCTCAATCATCTCGTTCCTCTGGATACGTGTTGGTCCTAAGCTGGTTTTTGTAATTGGTTGGTGAACAAAGTTTCGTTCATTTGAATATTTGGATCGGTAAGCTTGGAACTATGTATTCGTGTCANAATTCTGGG] [+] EMBL CD123568 [TGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGGGAAGTTCAAGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGACCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAGCTATGCATGGGGATAAACACCAGAAAGAGCGTGATCGTGCCCTAGACATGTTTCGTGAAGGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGGGTGTGGTGAGTTTTGGCATTCTGGAGTCGTTGGAGCAATTGGCTCCATTATTGGCCTCTGGTTAAACTGGTATAATTTGGTTTCGCCAATCATTTGGTCGTGTATTGGACACAGATTATGTCTGGTCGACCGTCTTAACAGTTGGATTGGTACATTGGCTATTAGTGTAACGAACGATTTGGTGATATAAGAGAGTCACATGAACATCTTGTGTTAAATCATCCAACCTCAATCATCTCGTTCCTCTGGATACGTGTTGGTCCTAAGCTGGTTTTTGTAATTGGTTGGTGAACAAAGTTTCGTTCATTTGAATATTTGGATCGGGTAGCTTGGGACTATGTA ] consensusID : consensus_4209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [AGTGATTGAGTAAACTCTGCCCTGGATGTGTTTGATGTACAAACAACTGGCTTCTCCTCCTTTTATGTCTTTGTATACACCATTGCTGAATGCTTTGTGCAAAAGCTGAAGTAGCATTTGAGCAAACTTTTTGGGCCATCTACCCTGAGTTGTTTTCCAGACTTTTGCTTGAGCATGACGACCAACGCCACCATTAAATCGGCGGAAAGGAATAATCTCTTTCTTCTCAATGACATTTTTTAAGTAAGTTTGTGCTCGCTGGAGAGTCATTCCCTTCACCGCACAAGCACACTCATGCATGTTTTTGAAATGAGTCCTCAGGTATGGGATTCTTGCTTTGCAAGTTTTACCTTCATCCTCATCTTTTGGTTCCCACGAGTACTTTA] [+] EMBL CD190025 [AGTGATTGAGTAAACTCTGCCCTGGATGTGTTTGATGTACAAACAACTGGCTTCTCCTCCTTTTATGTCTTTGTATACACCATTGCTGAATGCTTTGTGCAAAAGCTGAAGTAGCATTTGAGCAAACTTTTTGGGCCATCTACCCTGAGTTGTTTTCCAGACTTTTGCTTGAGCATGACGACCAACGCCACCATTAAATCGGCGGAAAGGAATAATCTCTTTCTTCTCAATGACATTTTTTAAGTAAGTTTGTGCTCGCTGGAGAGTCATTCCCTTCACCGCACAAGCACACTCATGCATGTTTTTGAAATGAGTCCTCAGGTATGGGATTCTTGCTTTGCAAGTTTTACCTTCATCCTCATCTTTTGGTTCCCACGAGTACTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4209#0 TGAGCGCGAACCACAACATTCGGCAACATGTAGAGATCCTAAATGAGAGTGGGAAGTTCA 60 consensus_4209#1 ------------------------------------------------------------ consensus_4209#0 AGCGTTTACTCAGCCTTCTCAATTCCTTCGACAATGCTCGTGTACTTGTCTTTACGGAGA 120 consensus_4209#1 ------------------------------------------------------------ consensus_4209#0 CCAAAAAGCGTACAGACGAACTTTGTCAAAAACTCCAAGATAAGGGTTTTGATGCCACAG 180 consensus_4209#1 ------------------------------------------------------------ consensus_4209#0 CTATGCATGGGGATAAACACCAGAAAGAGCGTGATCG-TGCCCTAGACATGTTTCGTGAA 239 consensus_4209#1 ---------------------AGTGATTGAGTAAACTCTGCCCTGGATGTGTTTGATGTA 39 ** * * ** * * ****** ** ***** ** * consensus_4209#0 GGTCACATATCTGTTCTCGTTGCCACAGATGTCGCATCTAGAGGCTTAGGGTGTGGTGAG 299 consensus_4209#1 ---CAAACAACTGGCTTCTCCTCCTTTTATGTC-TTTGTATACACC---ATTGCTGAATG 92 ** * * *** ** ** ***** * ** * * ** * * consensus_4209#0 TTTTGGCATTCTGGAGTCGTTGGAGCAATTGGCTCCATTATTGGCCTCTGGTTAAACTGG 359 consensus_4209#1 CTTTG---TGCAAAAGCTGAAGTAGCATTTGAGCAAACT------TTTTGGGCCATCTAC 143 **** * * ** * * **** *** * * * *** * ** consensus_4209#0 TATAATTTGGTTTCGCCAATCATTTGGTCGTGTATTGGACACAGATTATGTCTGGTCGAC 419 consensus_4209#1 CCTGAGTTGTTTTC--CAGACTTTTGCTTGAGCATG----ACGACCAACGCC------AC 191 * * *** **** ** * **** * * * ** ** * * * ** consensus_4209#0 CGTCTTAACAGTTGGATTGGTACATTGGCTATTAGTGTAACGAACGATTTGGTGATATAA 479 consensus_4209#1 CAT-TAAATCGGCGGAAAGGAATAATCTCTTTCTTCTCAATGACATTTTTTAAGTAAGTT 250 * * * ** * *** ** * * * ** * ** ** *** * * consensus_4209#0 GAGAGTCACATGAACATCTTGTGTTAAATCATCCAACCTCAATCATCTCGTTCCTCTGGA 539 consensus_4209#1 TGTGCTCGCTGGAGAGTCATTCCCTTCACCGCACAAGCACACTCATG-CATGTTTTTGAA 309 ** * ** ** * * * * *** * ** **** * * * ** * consensus_4209#0 TACGTGTTGGTCCTAAGCTGGTTTTTGTAATTGGTTGGTGAACAAAGTTT-CGTTCATTT 598 consensus_4209#1 -----ATGAGTCCTCAGGTA-----TGGGATTC-TTGCTTTGCAAGTTTTACCTTCATCC 358 * ***** ** * ** *** *** * *** *** * ***** consensus_4209#0 GAATATTTGGATCGGTAAGCTTGGAACTATGTATTCGTGTCANAATTCTGGG 650 consensus_4209#1 TCATCTTTTGGTTCCCACG---AGTACTTTA--------------------- 386 ** *** * * * * * *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||