These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [ATCTATCGATTGACAAACAGTTAGTCGGCTACAGTTGAAACTACTTCATTCTGCATGGTCGACTTTATGCATGTGCGTAATGAGATCAACTACGCGGCAACTGTATCCAAACTCATTATCATACCTACATGAACTAAGTTAGGGAATAACAATATATGAAAACATACCATGAAACTAATTTCACGAAGTTGTTGTTAAGACATATCCCAGCCTTCGCATCAAAGATAGATGAACTGGTACTTCCAACAAAGTCTGAACTGACAACCTCATCTTCAGTGTATTCCAAAATCCCCTTCAATGGTNCAGATGCAGTTGCTTCAACCCAGNCTTGATTTNNTCATAGGAAGCT] [+] EMBL CD065377 [ATCTATCGATTGACAAACAGTTAGTCGGCTACAGTTGAAACTACTTCATTCTGCATGGTCGACTTTATGCATGTGCGTAATGAGATCAACTACGCGGCAACTGTATCCAAACTCATTATCATACCTACATGAACTAAGTTAGGGAATAACAATATATGAAAACATACCATGAAACTAATTTCACGAAGTTGTTGTTAAGACATATCCCAGCCTTCGCATCAAAGATAGATGAACTGGTACTTCCAACAAAGTCTGAACTGACAACCTCATCTTCAGTGTATTCCAAAATCCCCTTCAATGGTNCAGATGCAGTTGCTTCAACCCAGNCTTGATTTNNTCATAGGAAGCT] consensusID : consensus_4232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence [GCATAAAGTCGACCATGCATAATGTTGTAGTTTCAACTGTAGCCGACTAACTTTTTCGTCAATCGATAGATAACGAATAAATACCGTTTAATCTGCCTAAAAAAAAAAAAAAAAAAAAAACTCGAGCCTAATTTTAGGTTATTTAGATTTAAACTACGAGGTTGAGTAGGTTTCGTAGTTTTATTATTTTTCGTTATTTGGGGTGTGGAGAGATACGAGTGTACGGATGAAGGGTTAATAGAGAATAGATTCACTTACGTCGGAGTTCTGAAGTTAATCTATTCCGTTAGACTTAGTGTGATGA] [+] EMBL AA917145 [GCATAAAGTCGACCATGCATAATGTTGTAGTTTCAACTGTAGCCGACTAACTTTTTCGTCAATCGATAGATAACGAATAAATACCGTTTAATCTGCCTAAAAAAAAAAAAAAAAAAAAAACTCGAGCCTAATTTTAGGTTATTTAGATTTAAACTACGAGGTTGAGTAGGTTTCGTAGTTTTATTATTTTTCGTTATTTGGGGTGTGGAGAGATACGAGTGTACGGATGAAGGGTTAATAGAGAATAGATTCACTTACGTCGGAGTTCTGAAGTTAATCTATTCCGTTAGACTTAGTGTGATGA] consensusID : consensus_4232#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [TTTGGTATTGTGATGGATGGGGGTTCCGAGAGATGGTGCAACACAGTGGCTAGAGACGTTATCAGATATGGCTCAGAATAGAAGCCAGTGGCGAGCCTATTGTAACCTTCTTTTACTTTCTTCATAAAGAGTGGTTCTAACTTTCTTAACTGGAAGAGTTTTCCGGTTGTACATTTCAGTCCCCTTATCTTTTCATCCTTTCTCTTCCTATTTTCATTATTTTGTGTAGCGCAAATGTAACTGGTGCCCTTTTGTAACAATATGTATGTGTTTAAATAAATAAATGTGTATGGGTAAGTG] [+] EMBL BG930300 [TTTGGTATTGTGATGGATGGGGGTTCCGAGAGATGGTGCAACACAGTGGCTAGAGACGTTATCAGATATGGCTCAGAATAGAAGCCAGTGGCGAGCCTATTGTAACCTTCTTTTACTTTCTTCATAAAGAGTGGTTCTAACTTTCTTAACTGGAAGAGTTTTCCGGTTGTACATTTCAGTCCCCTTATCTTTTCATCCTTTCTCTTCCTATTTTCATTATTTTGTGTAGCGCAAATGTAACTGGTGCCCTTTTGTAACAATATGTATGTGTTTAAATAAATAAATGTGTATGGGTAAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4232#0 ATCTATCGATTGACAAACAGTTAGTCGGCTACAGTTGAAACTACTTCATTCTGCATGGTC 60 consensus_4232#1 --------------------------GCATAAAGTCGACCATGCATAATGTTGTAGTTTC 34 consensus_4232#2 ---------------------------TTTGGTATTGTGATGGATGGGGGTTCCGAGAGA 33 * * * * consensus_4232#0 GACTTTATGCATGTGCGTAATGAGATCAACTACGCGGCAACTGTATCCAAACTCATTATC 120 consensus_4232#1 AACTGTAGCCGACTAACTTTTTCG-TCAATCGATAGATAAC-GAATAAATACCGTTTAAT 92 consensus_4232#2 TGGTGCAACACAGTGGCTAGAGACGTTATCAGATATGGCTCAGAATAGAAGCCAGT-GGC 92 * * * * * * * * ** * * * consensus_4232#0 ATACCTACATGAACTAAGTTAGGGAATAACAATATATGAAAACATACCATG-AAACTAAT 179 consensus_4232#1 CTGCCTAAAAAAAAAAAAAAAAAAAAAACTCGAGCCTAATTTTAGGTTATTTAGATTTAA 152 consensus_4232#2 GAGCCTATTGTAACCTTCTTTT--ACTTTCTTCATAAAGAGTGGTTCTAACTTTCTTAAC 150 **** ** * * * * consensus_4232#0 TTCACGAAGTTGTTGTTAAGACATATCCCAGCCTTCGCATCAAAGATAGATGAACTGGTA 239 consensus_4232#1 ACTACGAGGTTG-----AGTAGGTTTCGTAGTTTTATTATTT----TTCGTTATTTGGGG 203 consensus_4232#2 TGGAAGAGTTTTCCGGTTGTACATTTC--AGTCCCCTTATCTT---TTCATCCTTT---- 201 * ** ** * * ** ** ** * * * consensus_4232#0 CTTCCAACAAAGTCTGAACTGACAACCTCATCTTCAGTGTATTCCAAAATCCCCTTCAAT 299 consensus_4232#1 --TGTGGAGAGATACGAGTGTACGGATGAAGGGTTAATAGAGAATAGATTCACTTACGTC 261 consensus_4232#2 ---CTCTTCCTATTTTCATTATTTTGTGTAGCGCAAATGTAACTGGTGCCCTTTTGTAAC 258 * * * * * * * consensus_4232#0 GGTNCAGATGCAGTTGCTTCAACCCAGNCTTGATTTNNTCATAGGAAGCT 349 consensus_4232#1 GGAGTTC-TGAAGTTAATCTATTCC--GTTAGACTTAGTGTGATGA---- 304 consensus_4232#2 AATATGTATGTGTTTAAATAAATAA--ATGTGTATGGGTAAGTG------ 300 ** ** * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||