cluster # 4234

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Schistosoma mansoni
cluster # 4234 cluster # 4234 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4234#0 length = 344 sequences # 1

consensus_4234#1 length = 258 sequences # 1
consensus_4234#2 length = 190 sequences # 1

consensusID : consensus_4234#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [TTGCCGTACAATATCTGACATTCGTTTAGTAATGCAAGATGATTTCGTAAGAATTTACATCAGACAGAGGAGTAATGTACAACTTCATCCCATACGTCTACGTCTGCTACGCCTAATGATAACACAAAGTGGAAATTAACAAAGGGACGCTGATAGAGTAGCCAGATGTGAAATATTTAATTAAGGATAAACAGTGAACACGTTTCAATACAAGTGGTTTTGAGGTGTATCACCAGGACCCTTCAAACGCATATGCTGACTAGTGTAGGGGATGGTTGGAAAAGAGTTAGGGGCGGCCAAACCAAAACGTGGCATCAAAGCTTGAAGTCACTAACTTCTAGTCT]

[+] EMBL CD089800             [TTGCCGTACAATATCTGACATTCGTTTAGTAATGCAAGATGATTTCGTAAGAATTTACATCAGACAGAGGAGTAATGTACAACTTCATCCCATACGTCTACGTCTGCTACGCCTAATGATAACACAAAGTGGAAATTAACAAAGGGACGCTGATAGAGTAGCCAGATGTGAAATATTTAATTAAGGATAAACAGTGAACACGTTTCAATACAAGTGGTTTTGAGGTGTATCACCAGGACCCTTCAAACGCATATGCTGACTAGTGTAGGGGATGGTTGGAAAAGAGTTAGGGGCGGCCAAACCAAAACGTGGCATCAAAGCTTGAAGTCACTAACTTCTAGTCT]




>consensus_4234#0
TTGCCGTACAATATCTGACATTCGTTTAGTAATGCAAGATGATTTCGTAAGAATTTACAT
CAGACAGAGGAGTAATGTACAACTTCATCCCATACGTCTACGTCTGCTACGCCTAATGAT
AACACAAAGTGGAAATTAACAAAGGGACGCTGATAGAGTAGCCAGATGTGAAATATTTAA
TTAAGGATAAACAGTGAACACGTTTCAATACAAGTGGTTTTGAGGTGTATCACCAGGACC
CTTCAAACGCATATGCTGACTAGTGTAGGGGATGGTTGGAAAAGAGTTAGGGGCGGCCAA
ACCAAAACGTGGCATCAAAGCTTGAAGTCACTAACTTCTAGTCT

consensusID : consensus_4234#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [GATTGTATTGTCTACTACTGCCGGTGCTAAAAAGCTGACTAAAAAACTGCACAATCAGTATTAGATATCACAATTCGATAAGTATTTCGAGGATTGCACGACAGCGACCGATGGTTAGAGACCCTGAGTGATATGGCTCAAACTCGTTTGCAATGGTGCAGGTGCATTTACTCTTTGTGCTCTCCCAAATTCTTAATGGCCCTTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATACTCCTTGAATAACATCTTC]

[+] EMBL CD178757             [GATTGTATTGTCTACTACTGCCGGTGCTAAAAAGCTGACTAAAAAACTGCACAATCAGTATTAGATATCACAATTCGATAAGTATTTCGAGGATTGCACGACAGCGACCGATGGTTAGAGACCCTGAGTGATATGGCTCAAACTCGTTTGCAATGGTGCAGGTGCATTTACTCTTTGTGCTCTCCCAAATTCTTAATGGCCCTTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATACTCCTTGAATAACATCTTC]




>consensus_4234#1
GATTGTATTGTCTACTACTGCCGGTGCTAAAAAGCTGACTAAAAAACTGCACAATCAGTA
TTAGATATCACAATTCGATAAGTATTTCGAGGATTGCACGACAGCGACCGATGGTTAGAG
ACCCTGAGTGATATGGCTCAAACTCGTTTGCAATGGTGCAGGTGCATTTACTCTTTGTGC
TCTCCCAAATTCTTAATGGCCCTTTTTTTCTCTTTCCAAATTTATTTCATTGGATTATAC
TCCTTGAATAACATCTTC

consensusID : consensus_4234#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [GTTGTTTTTATTATTTTTGTTTTTTGGGGTGTNGAGAGATACGACTGTTACGGATGAAGGGTTAATAGAGAATAGATCTCNTTTATNTCGAGNCCCTGAAGTTTTACTCCTATNTGNTNCATAATGTTTAGNGNCGATGAANGGTCTTAGTATTTATNAACTTCNNTCGCCGNGNNTCCCTATTAGTAGA]

[+] EMBL SM275                [GTTGTTTTTATTATTTTTGTTTTTTGGGGTGTNGAGAGATACGACTGTTACGGATGAAGGGTTAATAGAGAATAGATCTCNTTTATNTCGAGNCCCTGAAGTTTTACTCCTATNTGNTNCATAATGTTTAGNGNCGATGAANGGTCTTAGTATTTATNAACTTCNNTCGCCGNGNNTCCCTATTAGTAGA]




>consensus_4234#2
GTTGTTTTTATTATTTTTGTTTTTTGGGGTGTNGAGAGATACGACTGTTACGGATGAAGG
GTTAATAGAGAATAGATCTCNTTTATNTCGAGNCCCTGAAGTTTTACTCCTATNTGNTNC
ATAATGTTTAGNGNCGATGAANGGTCTTAGTATTTATNAACTTCNNTCGCCGNGNNTCCC
TATTAGTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4234#1      --------GATTGTATTGTCTACTACTGCCGGTGCTAAAAAGCTGACTAAAAAACTGCAC 52
consensus_4234#2      ------------------------------------------------------------
consensus_4234#0      TTGCCGTACAATATCTGACATTCGTTTAGTAATGCAAGATGATTTCGTAAGAATTTACAT 60
                                                                                  

consensus_4234#1      AATCAGTATTAGATATCACAA--TTCGATAAGTATTTCGAGGATTGC-ACGACAGCGACC 109
consensus_4234#2      -----------GTTGTTTTTA--TTATTTTTGTTTTTTGGGGTGTNG-AGAGATACGACT 46
consensus_4234#0      CAGACAGAGGAGTAATGTACAACTTCATCCCATACGTCTACGTCTGCTACGCCTAATGAT 120
                                 *   *    *  **       *   *    *  *   *           

consensus_4234#1      G--ATGGTTAGAGACCCTGAGTGATATGGCTCAAACTCGTTTGCAATGGTGCAGGTGCAT 167
consensus_4234#2      GTTACGGATGAAGGGTTAATAGAGAATAGATCTCNTTTATNTCGAGNCCCTGAAGT---T 103
consensus_4234#0      AACACAAAGTGGAAATTAACAAAGGGACGCTGATAGAGTAGCCAGATGTGAAATATTTAA 180
                         *                        * *                     *  *    

consensus_4234#1      TTACTCTTTGTGCTCTCCCAAATTCTTAATGGCCCTT-----TTTTTCTCTTTCCAAATT 222
consensus_4234#2      TTACTCCT-ATNTGNTNCATAATGTTTAGNGNCGATGAANGGTCTTAGTATTTATNAACT 162
consensus_4234#0      TTAAGGAT-AAACAGTGAACACGTTTCAATACAAGTGGTTTTGAGGTGTATCACCAGGAC 239
                      ***    *       *    *    * *       *            * *         

consensus_4234#1      TATTTCATTGGATTATACTCCTTGAATAACATCTTC------------------------ 258
consensus_4234#2      TCNNTCGCCGNGNNTCCCTATTAGTAGA-------------------------------- 190
consensus_4234#0      CCTTCAAACGCATATGCTGACTAGTGTAGGGGATGGTTGGAAAAGAGTTAGGGGCGGCCA 299
                               *           * *   *                                

consensus_4234#1      ---------------------------------------------
consensus_4234#2      ---------------------------------------------
consensus_4234#0      AACCAAAACGTGGCATCAAAGCTTGAAGTCACTAACTTCTAGTCT 344