These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [TCGGCACGAGGCCTGGACCAGTTTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAAACTGGTTGAACAGCATACTAAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTCTATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAACGGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTGAAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAAGCTGTTTTACCTCCAATTTCAGCTAAAGAGACAGCCGTTCACGTTCAAACCTTGGGGTTACCTACTTACATGTCAGGTATGGCTCGTGGTCTTCTTGGTTGAAACCACCAACTTGGATTTCGTCATGCCCGTCGTACTGCACTTCGTGAAGCTGATCTAATTATTCTCGCAGGTGCCATTTGTGATTTTCGTTTAGATTATGGTCGTGTGTTAAATCGAAAAGCGAAAATTGTTGTAATTAATCGAAATAAGAAAAATTTATATCTTAATGCTGACTATTTTTGGAGACCATATCTAACAATTCAAGCTGATGTTGGGACAACCCTAAGAGATTTATCGCTTCACTACANAATGGTACTAATGAATTAAATTGTTCCATCGAATGG] [+] EMBL CD081277 [TCGGCACGAGGCCTGGACCAGTTTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAAACTGGTTGAACAGCATACTAAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTCTATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAACGGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTGAAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAAGCTGTTTTACCTCCAATTTCAGCTAAAGAGACAGCCGTTCACGTTCAAACCTTGGGGTTACCTACTTACATGTCAGGTATGGCTCGTGGTCTTCTTGGTTGAAACCACCAACTTGGATTTCGTCATGCCCGTCGTACTGCACTTCGTGAAGCTGATCTAATTATTCTCGCAGGTGCCATTTGTGATTTTCGTTTAGATTATGGTCGTGTGTTAAATCGAAAAGCGAAAATTGTTGTAATTAATCGAAATAAGAAAAATTTATATCTTAATGCTGACTATTTTTGGAGACCATATCTAACAATTCAAGCTGATGTTGGGACAACCCTAAGAGATTTATCGCTTCACTACANAATGGTACTAATGAATTAAATTGTTCCATCGAATGG] consensusID : consensus_4236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [GGCCAANATCTCGGTACGAGGCGATAGATGTAAGAAATGAAGCATCTGCTGTTTTTGCTGCTGATGCTGTTTCAAGACTTTCTGGTTCCGTTGGTGTGGCTGTCGTCACAGCAGGTCCTGGTCTTACTAATACAGTGACAGCAGTAAAGAATGCTCAGATGGCTGAATCTCCTGTAGTCCTTCTAGCTGGAGCTGCTTCTGGACTTTTACGTGGTCGTGGATCACTTCAAGATATTGACCAGCTTGCTGTATTTCGCCCAATTTGTAAATGGTGCAGACGTATAAACTACGTCAGAGAGATTATCCCTGTTCTTTGTAAAGCATTTTATATTGCACAATCGGATACACCTGGACCAGTTTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAAACTGGTTGAACAGCATACTAAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTCTATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAACGGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTGAAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAAGCTGTTTTACCTNCAATTTCAGCTAAAGAGACAGCCGTTCA] [+] EMBL CD082199 [GGCCAANATCTCGGTACGAGGCGATAGATGTAAGAAATGAAGCATCTGCTGTTTTTGCTGCTGATGCTGTTTCAAGACTTTCTGGTTCCGTTGGTGTGGCTGTCGTCACAGCAGGTCCTGGTCTTACTAATACAGTGACAGCAGTAAAGAATGCTCAGATGGCTGAATCTCCTGTAGTCCTTCTAGCTGGAGCTGCTTCTGGACTTTTACGTGGTCGTGGATCACTTCAAGATATTGACCAGCTTGCTGTATTTCGCCCAATTTGTAAATGGTGCAGACGTATAAACTACGTCAGAGAGATTATCCCTGTTCTTTGTAAAGCATTTTATATTGCACAATCGGATACACCTGGACCAGTTTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAAACTGGTTGAACAGCATACTAAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTCTATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAACGGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTGAAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAAGCTGTTTTACCTNCAATTTCAGCTAAAGAGACAGCCGTTCA] consensusID : consensus_4236#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence [AGGACTACAGGAGATTCAGCCATCTGAGCATTCTTTACTGCTGTCACTGTATTAGTAAGACCAGGACTTTATTCGGTTTTATCAAAGATATGATTTTGAGTTATTCGTGATTAATCGAT] [+] EMBL CD170292 [AGGACTACAGGAGATTCAGCCATCTGAGCATTCTTTACTGCTGTCACTGTATTAGTAAGACCAGGACTTTATTCGGTTTTATCAAAGATATGATTTTGAGTTATTCGTGATTAATCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4236#0 ------------------------------------------------------------ consensus_4236#1 GGCCAANATCTCGGTACGAGGCGATAGATGTAAGAAATGAAGCATCTGCTGTTTTTGCTG 60 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 ------------------------------------------------------------ consensus_4236#1 CTGATGCTGTTTCAAGACTTTCTGGTTCCGTTGGTGTGGCTGTCGTCACAGCAGGTCCTG 120 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 ------------------------------------------------------------ consensus_4236#1 GTCTTACTAATACAGTGACAGCAGTAAAGAATGCTCAGATGGCTGAATCTCCTGTAGTCC 180 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 ------------------------------------------------------------ consensus_4236#1 TTCTAGCTGGAGCTGCTTCTGGACTTTTACGTGGTCGTGGATCACTTCAAGATATTGACC 240 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 ------------------------------------------------------------ consensus_4236#1 AGCTTGCTGTATTTCGCCCAATTTGTAAATGGTGCAGACGTATAAACTACGTCAGAGAGA 300 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 --------------------------------------TCGGCACGAGGCCTGGACCAGT 22 consensus_4236#1 TTATCCCTGTTCTTTGTAAAGCATTTTATATTGCACAATCGGAT--ACACCTGGACCAGT 358 consensus_4236#2 ----------------------------------------------AGGACTACAGGAGA 14 * ** * ** consensus_4236#0 TTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAA-ACTGGTTGAAC-AGCATACT 80 consensus_4236#1 TTTAGTTGAATTTCCGATCGACCTGTTATATCCCTACAA-ACTGGTTGAAC-AGCATACT 416 consensus_4236#2 TTCAGCCA----TCTGAGCATTCTTTACTGCTGTCACTGTATTAGTAAGACCAGGACTTT 70 ** ** ** ** * ** * * ** * * ** ** ** * * consensus_4236#0 AAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTC 140 consensus_4236#1 AAGTTGTCTGACAAAACAAATTCTTTAAGGCAGAAAATTGTAAATTGGTATCTACGTTTC 476 consensus_4236#2 ATTCGGTTTTATCAAAGATATGATTTTGAGTTATTCGTGATTAATCGAT----------- 119 * ** * * *** * ** *** * * * *** * * consensus_4236#0 TATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAAC 200 consensus_4236#1 TATCTTTACAATTTATTCGCCAATGGTTTCTCATCGAAATCACATCCATCTAAAACAAAC 536 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 GGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTG 260 consensus_4236#1 GGTTCAGATGGAATTGTTGTCAAATCACCGAAAATTCCTCTTCCATCTAAAAGACAAGTG 596 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 AAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAA 320 consensus_4236#1 AAGAAATTAGCTCAGCTGATAAGACTTTCTGAAAAACCAATTCTACTTATCAGTAGTCAA 656 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 GCTGTTTTACCTCCAATTTCAGCTAAAGAGACAGCCGTTCACGTTCAAACCTTGGGGTTA 380 consensus_4236#1 GCTGTTTTACCTNCAATTTCAGCTAAAGAGACAGCCGTTCA------------------- 697 consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 CCTACTTACATGTCAGGTATGGCTCGTGGTCTTCTTGGTTGAAACCACCAACTTGGATTT 440 consensus_4236#1 ------------------------------------------------------------ consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 CGTCATGCCCGTCGTACTGCACTTCGTGAAGCTGATCTAATTATTCTCGCAGGTGCCATT 500 consensus_4236#1 ------------------------------------------------------------ consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 TGTGATTTTCGTTTAGATTATGGTCGTGTGTTAAATCGAAAAGCGAAAATTGTTGTAATT 560 consensus_4236#1 ------------------------------------------------------------ consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 AATCGAAATAAGAAAAATTTATATCTTAATGCTGACTATTTTTGGAGACCATATCTAACA 620 consensus_4236#1 ------------------------------------------------------------ consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 ATTCAAGCTGATGTTGGGACAACCCTAAGAGATTTATCGCTTCACTACANAATGGTACTA 680 consensus_4236#1 ------------------------------------------------------------ consensus_4236#2 ------------------------------------------------------------ consensus_4236#0 ATGAATTAAATTGTTCCATCGAATGG 706 consensus_4236#1 -------------------------- consensus_4236#2 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||