These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [GGTTGCATTCAATTGAGTTGTTAGCCAAGGGGGTCCCACTGAGATTCCCAAACTACCCAGGCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGACAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTCGTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCAATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATGGTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATAACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAAC] [+] EMBL AI740377 [GGTTGCATTCAATTGAGTTGTTAGCCAAGGGGGTCCCACTGAGATTCCCAAACTACCCAGGCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGACAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTCGTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCAATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATGGTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATAACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAAC] consensusID : consensus_424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [ACGTAACATTCAAATCAATGAGTGATCAGGCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGACAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTCGTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCAATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATGGTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATAACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAACA] [+] EMBL AI740376 [ACGTAACATTCAAATCAATGAGTGATCAGGCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGACAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTCGTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCAATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATGGTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGCTCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATAACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_424#0 GGTTGCATTCAATTGAGTTGTTAGCCAAGGGGGTCCCACTGAGATTCCCAAACTACCCAG 60 consensus_424#1 ------------------------------ACGTAACATTCAAATCAATGAG-TGATCAG 29 ** ** * * ** * * *** consensus_424#0 GCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGA 120 consensus_424#1 GCTGCTGCTAAGACAAGGCGTGCTCTCTGAATGCTGACAGCAGGGCCCCATCTCTGAGGA 89 ************************************************************ consensus_424#0 CAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTC 180 consensus_424#1 CAGCACCCACACAACTCATTGCACATGGAGACGCTGAGTTGATGCCCACCTGGGGCCTTC 149 ************************************************************ consensus_424#0 GTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCA 240 consensus_424#1 GTCTCTGCATTCCAGTGTCTTTGATGCTGGCAGACACTCTGCAGAGAAATGGAAACACCA 209 ************************************************************ consensus_424#0 ATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATG 300 consensus_424#1 ATCTAGCCACAAAACCTTTGACTAACATCTGTCCTGTCTGCAAAACATGCTTAGGCAATG 269 ************************************************************ consensus_424#0 GTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGC 360 consensus_424#1 GTGGCACAAAAGCTTGTGGAGGGCTAGAGAGACGGCTCAGTGGTTAAGAGCACTGGCTGC 329 ************************************************************ consensus_424#0 TCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATA 420 consensus_424#1 TCTTCTGGAGGTCCTGAGTTCAATTCCCAGCAACCACATGACAGCTCACAACTGACTATA 389 ************************************************************ consensus_424#0 ACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAAC- 470 consensus_424#1 ACTCCAGTTCCAGGGGATCCTTCACTCTCACACAGATATGCAGGCAAAACA 440 ************************************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||