cluster # 4246

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Schistosoma mansoni
cluster # 4246 cluster # 4246 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4246#0 length = 537 sequences # 2

consensus_4246#1 length = 406 sequences # 1

consensusID : consensus_4246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 537
fasta sequence

                              [GGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGAGTGAATACCTTGCGGGGTAGAGCACTGGAAGGGCTAGGGGGTCTTACCGATCTACCAATCCCTACCAAACTCCGAATACGCAAGAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCTAATCGCCAGTTAAGGCCCCTAAGTCATGGCTAAGTGGGAAAGGATGTGGAAATCCATAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTAGGGTTTCTGCGCCGAAGATGTACCGGGGCTCAAGCCATGCGCCGAAACTGCGAACTCCTGCGGGAGTGGTAGCGGAGCGTTCCGTAAGCCTGCGAAGGGACAGCCGTGAGGCATCCTGGAGGTATCGGAAGTGCGAATGCAGACATGAGTAACGCGAAAAAGTGTGAGAGACACTTTCGCCGTAAGTCCAAGGGTTCCTGCGTAAAGCTAATCTGCGCAGGGTCAGCCGGTCCC]

[+] EMBL CD086887             [GGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGAGTGAATACCTTGCGGGGTAGAGCACTGGAAGGGCTAGGGGGTCTTACCGATCTACCAATCCCTACCAAACTCCGAATACGCAAGAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCTAATCGCCAGTTAAGGCCCCTAAGTCATGGCTAAGTGGGAAAGGATGTGGAAATCCATAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTAGGGTTTCTGCGCCGAAGATGTACCGGGGCTCAAGCCATGCGCCGAAACTGCGAACTCCTGCGGGAGTGGTAGCGGAGCGTTCCGTAAGCCTGCGAAGGGACAGCCGTGAGGCATCCTGGAGGTATCGGAAGTGCGAATGCAGACATGAGTAACGCGAAAAAGTGTGAGAGACACTTTCGCCGTAAGTCCAAGGGTTCCTGCGTAAAGCTAATCTGCGCAGGGTCAGCCGGTCCC]
[+] EMBL CD086862             [GGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGAGTGAATACCTTGCGGGGTAGAGCACTGGAAGGGCTAGGGGGTCTTACCGATCTACCAATCCCTACCAAACTCCGAATACGCAAGAGTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCTAATCGCCAGTTAAGGCCCCTAAGTCATGGCTAAGTGGGAAAGGATGTGGAAATCCATAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTAGGGTTTCTGCGCCGAAGATGTACCGGGGCTCAAGCCATGCGCCGAAACTGCGAACTCCTGCGGGAGTGGTAGCGGAGCGTTCCGTAAGCCTGCGAAGGGACAGCCGTGAGGCATCCTGGAGGTATCGGAAGTG                                                                                                     ]




>consensus_4246#0
GGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGAGTGAATACCTTGCGGGGTAGAGCAC
TGGAAGGGCTAGGGGGTCTTACCGATCTACCAATCCCTACCAAACTCCGAATACGCAAGA
GTACTGCTCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCT
AATCGCCAGTTAAGGCCCCTAAGTCATGGCTAAGTGGGAAAGGATGTGGAAATCCATAAA
CAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCTCACTGGT
CTAGGGTTTCTGCGCCGAAGATGTACCGGGGCTCAAGCCATGCGCCGAAACTGCGAACTC
CTGCGGGAGTGGTAGCGGAGCGTTCCGTAAGCCTGCGAAGGGACAGCCGTGAGGCATCCT
GGAGGTATCGGAAGTGCGAATGCAGACATGAGTAACGCGAAAAAGTGTGAGAGACACTTT
CGCCGTAAGTCCAAGGGTTCCTGCGTAAAGCTAATCTGCGCAGGGTCAGCCGGTCCC

consensusID : consensus_4246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [TCAGCGACTTAAAGTAGCGAGCAAGCATAAGCCGATAGGTGGATGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTTGCTTTAGACCCGAAACCTAGTGATCTAGCCATGTGCAGGATGAAGGTGAGGTAACACTCACTGGAGGTCCGAACCGGTGCCTGTTGAAAAAGGCTCGGATGATGTGTGGCTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGGATGAATACCTCAGGGGGTAGAGCTACTGGAAGGGCTAGGGGGTCTTACCGATCTACCGATCCCTACCAAACTCCGAATACCTGAGAGTACTATCCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAA]

[-] EMBL CD084571             [TCAGCGACTTAAAGTAGCGAGCAAGCATAAGCCGATAGGTGGATGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTTGCTTTAGACCCGAAACCTAGTGATCTAGCCATGTGCAGGATGAAGGTGAGGTAACACTCACTGGAGGTCCGAACCGGTGCCTGTTGAAAAAGGCTCGGATGATGTGTGGCTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCCTCGGATGAATACCTCAGGGGGTAGAGCTACTGGAAGGGCTAGGGGGTCTTACCGATCTACCGATCCCTACCAAACTCCGAATACCTGAGAGTACTATCCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAA]




>consensus_4246#1
TCAGCGACTTAAAGTAGCGAGCAAGCATAAGCCGATAGGTGGATGCGCAGCGAAAGCGAG
TCTGAACAGGGCGTTCAGTTCGTTGCTTTAGACCCGAAACCTAGTGATCTAGCCATGTGC
AGGATGAAGGTGAGGTAACACTCACTGGAGGTCCGAACCGGTGCCTGTTGAAAAAGGCTC
GGATGATGTGTGGCTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTGGTTCTCCGCG
AAATCTATTTAGGTAGAGCCTCGGATGAATACCTCAGGGGGTAGAGCTACTGGAAGGGCT
AGGGGGTCTTACCGATCTACCGATCCCTACCAAACTCCGAATACCTGAGAGTACTATCCG
GGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4246#0      --GGTTCTCCGCGAAATCTATTTAGGTAGAGCCT-CGAGTGAATACCTTGCGGGGTAGAG 57
consensus_4246#1      TCAGCGACTTAAAGTAGCGAGCAAGCATAAGCCGATAGGTGGATGCGCAGCGAAAGCGAG 60
                         *           * * *   **    ****     *** ** *   ***     ***

consensus_4246#0      CACTGGAAGGGCTAGGGGGTCTTACCGATCTACC-AATCCCTACCAAACTCCGAATACGC 116
consensus_4246#1      TCTGAACAGGGCGTTCAGTTCGTTGCTTTAGACCCGAAACCTAGTGATCTAGCCATGTGC 120
                             *****     * ** *  *  *  ***  *  ****   * **    **  **

consensus_4246#0      AAGAGTACTGCTCGGGAG-ACACACGGCGGGTGCTAAC--GTCCGTCGTGAAAAGGGAAA 173
consensus_4246#1      AGGATGAAGGTGAGGTAACACTCACTGGAGGTCCGAACCGGTGCCTGTTGAAAAAGGCTC 180
                      * **  *  *   ** *  ** *** *  *** * ***  ** * *  ****** **   

consensus_4246#0      CAACCCTAATCGCCAGTTAAGGCCCCTAAGTCATGGCTAAGTGGGAAAGGATGTGGAAAT 233
consensus_4246#1      GGA---TGATGTGTGGCTAGGGGTGAAAGGCCA--ATCAAACTGGGAAATAGCTGGTTCT 235
                        *   * **     * ** **     * * **     **   ** **  *  ***   *

consensus_4246#0      CCATAAACAACCAGGAGGTTGGCTTAGAAGCAGCCATCCTTTAAAGAAAGCGTAACAGCT 293
consensus_4246#1      CCGCGAAATCTATTTAGGTAGAGCCTCGGATGAATACCTC----AGGGGGTAGAGCTACT 291
                      **   **        **** *              * *      **   *   * *  **

consensus_4246#0      CACTGGTCTAGGGTTTCTGCGCCGAAGATGTACCGGGGCTCAAGCCATGCGCCGAA-ACT 352
consensus_4246#1      GGAAGGGCTAGGGGGTCT-TACCGA---TCTACCGATCCCTA--CCAAACTCCGAATACC 345
                          ** ******  ***   ****   * *****   *  *  ***  * ***** ** 

consensus_4246#0      GCGAACTCCTGCGGGAGTGGTA-GCGGAGCGTTCCGTAAGCCTGCGAAGGGACAGCCGTG 411
consensus_4246#1      TGAGAGTACTATCCGGGAGACACACGGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAACA 405
                          * * **    * * *  *  *** * ** *      **  **     *  *     

consensus_4246#0      AGGCATCCTGGAGGTATCGGAAGTGCGAATGCAGACATGAGTAACGCGAAAAAGTGTGAG 471
consensus_4246#1      A----------------------------------------------------------- 406
                      *                                                           

consensus_4246#0      AGACACTTTCGCCGTAAGTCCAAGGGTTCCTGCGTAAAGCTAATCTGCGCAGGGTCAGCC 531
consensus_4246#1      ------------------------------------------------------------
                                                                                  

consensus_4246#0      GGTCCC 537
consensus_4246#1      ------