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Schistosoma mansoni
cluster # 4251 cluster # 4251       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4251#0 length = 1132 sequences # 2  
consensus_4251#1 length = 479 sequences # 1  

consensusID : consensus_4251#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1132
fasta sequence
                              [CTCGAGGCCAAGATTGGGCACGAGGTCGGGTCATAAAACCGTGTGTCACGTATTGTCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTTCGATCAGCTGTACATAAATGGCCATCATTATCATCTATTTTACATTTACCTAATAGTCTTATTTTTAATGCACCTAAAATAAACAATCTAACANATCCAAATAAAAAAATGAGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTGATACACCAGATCATATTTATAANAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAA-TAATTATGATCATGAAAAACGTCCTGGCGTATCAAATTTATTAAGAATTCTATCTGCTATTCAGGGTCGTGAGATTGAAGAAATTCTATCTACAGTAGCTAATGAATGGAGTAAAGAAGATTTGAAATCTAAAGTATCAGATGCACTTATTCAAGAATTTGATCCAATTCAGAAACGACTACATCATCTTATGAATACAGAAGAAGGTCAATCTACTATAGTTAACTGTTTATCACATGGTTCAAAGCAAGCTAATCAATTGGCCACAAAACGTTTAGATCTAATTTATTCTGCCATTGGTTGTAAGATACCAGTTTGTAAAAGTTATTCTTCATCACACAACTAGAATTGTAGCAGACCCTACTGAGTCTTCTTTCATGTACATTGGTTACAATACTTTTTATATATACAA]

[+] EMBL CD081233             [CTCGAGGCCAAGATTGGGCACGAGGTCGGGTCATAAAACCGTGTGTCACGTATTGTCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTTCGATCAGCTGTACATAAATGGCCATCATTATCATCTATTTTACATTTACCTAATAGTCTTATTTTTAATGCACCTAAAATAAACAATCTAACANATCCAAATAAAAAAATGAGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTGATACACCAGATCATATTTATAANAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAA TAATTATGATCAT                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD075064             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTGATACACCAGATCATATTTATAAAAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAATTAATTATGATCATGAAAAACGTCCTGGCGTATCAAATTTATTAAGAATTCTATCTGCTATTCAGGGTCGTGAGATTGAAGAAATTCTATCTACAGTAGCTAATGAATGGAGTAAAGAAGATTTGAAATCTAAAGTATCAGATGCACTTATTCAAGAATTTGATCCAATTCAGAAACGACTACATCATCTTATGAATACAGAAGAAGGTCAATCTACTATAGTTAACTGTTTATCACATGGTTCAAAGCAAGCTAATCAATTGGCCACAAAACGTTTAGATCTAATTTATTCTGCCATTGGTTGTAAGATACCAGTTTGTAAAAGTTATTCTTCATCACACAACTAGAATTGTAGCAGACCCTACTGAGTCTTCTTTCATGTACATTGGTTACAATACTTTTTATATATACAA]


>consensus_4251#0 CTCGAGGCCAAGATTGGGCACGAGGTCGGGTCATAAAACCGTGTGTCACGTATTGTCGTG ATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACA ATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGAT TTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTG AACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAAT GGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCAC CAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAG CTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTC ATATTGAATTAGCACGTGATCTAGTTCGATCAGCTGTACATAAATGGCCATCATTATCAT CTATTTTACATTTACCTAATAGTCTTATTTTTAATGCACCTAAAATAAACAATCTAACAN ATCCAAATAAAAAAATGAGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTG ATACACCAGATCATATTTATAANAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAA TAATTATGATCATGAAAAACGTCCTGGCGTATCAAATTTATTAAGAATTCTATCTGCTAT TCAGGGTCGTGAGATTGAAGAAATTCTATCTACAGTAGCTAATGAATGGAGTAAAGAAGA TTTGAAATCTAAAGTATCAGATGCACTTATTCAAGAATTTGATCCAATTCAGAAACGACT ACATCATCTTATGAATACAGAAGAAGGTCAATCTACTATAGTTAACTGTTTATCACATGG TTCAAAGCAAGCTAATCAATTGGCCACAAAACGTTTAGATCTAATTTATTCTGCCATTGG TTGTAAGATACCAGTTTGTAAAAGTTATTCTTCATCACACAACTAGAATTGTAGCAGACC CTACTGAGTCTTCTTTCATGTACATTGGTTACAATACTTTTTATATATACAA



consensusID : consensus_4251#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence
                              [CCGAGGCAAGAATCGGCACGAGGCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTACGATCA]

[+] EMBL CD077392             [CCGAGGCAAGAATCGGCACGAGGCGTGATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTACGATCA]


>consensus_4251#1 CCGAGGCAAGAATCGGCACGAGGCGTGATAGTGATGTATCACAATTTTTTATGCTAATCG CAGATTTACATTCTCTTACATCAAACAATTGTAATGACCTAAAGCATGGTATTCATGAAC TTGTGGCTACTCTGCTCGCATGTGGATTTGAAGCAAATTCTTTAAAGCAAATAATATTCC TTCAATCCTCTGTACCTGGACATACTGAACTAGCATGGATTTTATCATCAGTTTGCTCGG TCTTGAGGTTAGCTCATTTACCTCAATGGAGAGAAAAATGTGGATATTTTGACTCAGTAT CTGATGTATCTACCAACAATACCTCACCAATAAATAATATCCCTGATAATGCTTCTGTTG GTTTATTTACTTATCCTACTTTACAAGCTGCTGATATACTACTTTATGGAGCACATTTAG TTCCTGTTGGAGCTGATCAAATAACTCATATTGAATTAGCACGTGATCTAGTACGATCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4251#0      CTCGAGGCCAAGATTGGGCACGAGGTCGGGTCATAAAACCGTGTGTCACGTATTGTCGTG 60
consensus_4251#1      -------------------------CCGAGGCAAGAATCGGCACGA--------GGCGTG 27
                                                ** * **  ** * *   *         * ****

consensus_4251#0      ATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACA 120
consensus_4251#1      ATAGTGATGTATCACAATTTTTTATGCTAATCGCAGATTTACATTCTCTTACATCAAACA 87
                      ************************************************************

consensus_4251#0      ATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGAT 180
consensus_4251#1      ATTGTAATGACCTAAAGCATGGTATTCATGAACTTGTGGCTACTCTGCTCGCATGTGGAT 147
                      ************************************************************

consensus_4251#0      TTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTG 240
consensus_4251#1      TTGAAGCAAATTCTTTAAAGCAAATAATATTCCTTCAATCCTCTGTACCTGGACATACTG 207
                      ************************************************************

consensus_4251#0      AACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAAT 300
consensus_4251#1      AACTAGCATGGATTTTATCATCAGTTTGCTCGGTCTTGAGGTTAGCTCATTTACCTCAAT 267
                      ************************************************************

consensus_4251#0      GGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCAC 360
consensus_4251#1      GGAGAGAAAAATGTGGATATTTTGACTCAGTATCTGATGTATCTACCAACAATACCTCAC 327
                      ************************************************************

consensus_4251#0      CAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAG 420
consensus_4251#1      CAATAAATAATATCCCTGATAATGCTTCTGTTGGTTTATTTACTTATCCTACTTTACAAG 387
                      ************************************************************

consensus_4251#0      CTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTC 480
consensus_4251#1      CTGCTGATATACTACTTTATGGAGCACATTTAGTTCCTGTTGGAGCTGATCAAATAACTC 447
                      ************************************************************

consensus_4251#0      ATATTGAATTAGCACGTGATCTAGTTCGATCAGCTGTACATAAATGGCCATCATTATCAT 540
consensus_4251#1      ATATTGAATTAGCACGTGATCTAGTACGATCA---------------------------- 479
                      ************************* ******                            

consensus_4251#0      CTATTTTACATTTACCTAATAGTCTTATTTTTAATGCACCTAAAATAAACAATCTAACAN 600
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      ATCCAAATAAAAAAATGAGTAAATCAGATACATCCGAATTAGGTATTATCTATTTAACTG 660
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      ATACACCAGATCATATTTATAANAAAATTAAACGTGCTGAAACTGATTCTATTCGTAAAA 720
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      TAATTATGATCATGAAAAACGTCCTGGCGTATCAAATTTATTAAGAATTCTATCTGCTAT 780
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      TCAGGGTCGTGAGATTGAAGAAATTCTATCTACAGTAGCTAATGAATGGAGTAAAGAAGA 840
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      TTTGAAATCTAAAGTATCAGATGCACTTATTCAAGAATTTGATCCAATTCAGAAACGACT 900
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      ACATCATCTTATGAATACAGAAGAAGGTCAATCTACTATAGTTAACTGTTTATCACATGG 960
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      TTCAAAGCAAGCTAATCAATTGGCCACAAAACGTTTAGATCTAATTTATTCTGCCATTGG 1020
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      TTGTAAGATACCAGTTTGTAAAAGTTATTCTTCATCACACAACTAGAATTGTAGCAGACC 1080
consensus_4251#1      ------------------------------------------------------------
                                                                                  

consensus_4251#0      CTACTGAGTCTTCTTTCATGTACATTGGTTACAATACTTTTTATATATACAA 1132
consensus_4251#1      ----------------------------------------------------
                                                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)