These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 813 fasta sequence [AACGTTGGATTTAATTAAAATTCATCCGTTGAGATTTTACAAATATATTATTCCTATTTCCAATATATTATTTGCAAAAGATTGTAAAGGTATATGTATTCACTAGCTAGTAAACAGAGTAGAAAGCTGCAAGGTCGTTTACAGCTTCTCTAAGGGCTACTTACAACAAAAGACAGAATATGCGGTACAGCAGAGTAGCTAATGTATGTATGTATGTATATGGTACCGAGGGTTAGTGAGGATGAAGGTCA-GTCAATCAGTCAGTTACAACGTAGGACCAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATAGTTAATTTAGTGGTAGTAGTATATGAAAGATAGGTTGTATATAAGGATATAGTATAGGAAGGAAGACAAGTATGAAGCAATTTTAATCTTAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACACCATTGTGACCGATTCTGATCCATGTCACCTAGAGTTTCCAACCATTGGTTACGATAGTCATGCGGACCCCAACCAAGTAGATGCGTCTACCAACATGGCTCAGACTAGAAATTAATGACTTCAAGGACTGATGCCATGTTTTGGTTTGGCCGCCTTTAACTCTCTTCCAACCATCCCCAATACTAGTCAGCATAGCGCGTCGTGGTAATCAGCGTTCAAGCATACGTAATACGTGGCCAAATAAAATGAATCAATCACACAAAAAAAAACTGATCTACACTTTGTATACACAGTTATAGATAATGAAAATACATTGAGAAAATATGAAATC] [-] EMBL CD129707 [AACGTTGGATTTAATTAAAATTCATCCGTTGAGATTTTACAAATATATTATTCCTATTTCCAATATATTATTTGCAAAAGATTGTAAAGGTATATGTATTCACTAGCTAGTAAACAGAGTAGAAAGCTGCAAGGTCGTTTACAGCTTCTCTAAGGGCTACTTACAACAAAAGACAGAATATGCGGTACAGCAGAGTAGCTAATGTATGTATGTATGTATATGGTACCGAGGGTTAGTGAGGATGAAGGTCA GTCAATCAGTCAGTTACAACGTAGGACCAGGCACATATATGCATCGGTCCAAGTTG ] [+] EMBL CD156367 [ ctttTCATGTGTATCAGTCAGTCACAACGTAGGACCAGGCACATATATGCATCGGTCCAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATAGTTAATTTAGTGGTAGTAGTATATGAAAGATAGGTTGTATATAAGGATATAGTATAGGAAGGAAGACAAGTATGAAGCAATTTTAATCTTAAGGTTTAAGGGAAGATAAAGAGTGTATACACCTACACCATTGTGACCGATTCTGATCCATGTCACCTAGAGTTTCCAACCATTGGTTACGATAGTCATGCGGACCCCAACCAAGTAGATGCGTCTACCAACATGGCTCAGACTAGAAATTAATGACTTCAAGGACTGATGCCATGTTTTGGTTTGGCCGCCTTTAACTCTCTTCCAACCATCCCCAATACTAGTCAGCATAGCGCGTCGTGGTAATCAGCGTTCAAGCATACGTAATACGTGGCCAAATAAAATGAATCAATCACACAAAAAAAAACTGATCTACACTTTGTATACACAGTTATAGATAATGAAAATACATTGAGAAAATATGAAATC] consensusID : consensus_4261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [GTCTACCCGGCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCATATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACGTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCGCCGGTGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGAA] [+] EMBL CD146225 [GTCTACCCGGCATAGTCGGAACGCAGGCCCCTTATATGGTCAACCACAAACACCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCATATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACGTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTCGATGTCTTGCGCCGGTGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4261#0 AACGTTGGATTTAATTAAAATTCATCCGTTGAGATTTTACAAATATATTATTCCTATTTC 60 consensus_4261#1 ------------------------------------------------------------ consensus_4261#0 CAATATATTATTTGCAAAAGATTGTAAAGGTATATGTATTCACTAGCTAGTAAACAGAGT 120 consensus_4261#1 ------------------------------------------------------------ consensus_4261#0 AGAAAGCTGCAAGGTCGTTTACAGCTTCTCTAAGGGCTACTTACAACAAAAGACAGAATA 180 consensus_4261#1 ------------------------------------------------------------ consensus_4261#0 TGCGGTACAGCAGAGTAGCTAATGTATGTATGTATGTATATGGTACCGAGGGTTAGTGAG 240 consensus_4261#1 ------------------------------------------------------------ consensus_4261#0 GATGAAGGTCAGTCAATCAGTCAGTTACAACGTAGGACCAGGCACATATATGCATCGGTC 300 consensus_4261#1 ------------------------------------------------------------ consensus_4261#0 CAAGTTGCCATACCTCATTAGCACAACAAGATCAACACCGGATTCATAGAAATAGTTAAT 360 consensus_4261#1 ------------------------------------------------------------ consensus_4261#0 TTAGTGGTAGTAGTATATGAAAGATAGGTTGTATATAAGGATATAGTATAGGAAGGAAGA 420 consensus_4261#1 ---------------------------------------------GTCTACCCGGCATAG 15 ** ** * * consensus_4261#0 CAAGTATGAAGCAATTTTAATCTTAAGGTTTAAGGGAAG-ATAAAGAGTGTATACACCTA 479 consensus_4261#1 TCGGAACGCAGGCCCCTTA----TATGGTCAACCACAAACACCAACAGTGCTTTCGTCTT 71 * * * ** *** ** *** * ** * ** **** * * ** consensus_4261#0 CACCATTGTGACCGATTCTGATCCATGTCACCTAGAGTTTCCAACCATTGGTTACGATAG 539 consensus_4261#1 GGTCAC-GTCATT--CTCCAAGTCAC--TGGTCACAGTCATATAGCTTTCGAGACGACGC 126 ** ** * ** * ** * *** * * ** * **** consensus_4261#0 TCATGCGGACCCCAACCA-AGTAGATGCGTCTACCAACATGGCTCAGACTAGAAATTAAT 598 consensus_4261#1 TTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACGTGACTCACATTC---TTTCAG 183 * *** * ** ** ** * * * ** ** **** * * ** * consensus_4261#0 GACTTCAAGGACTGATGCCATGTTTTG-GTTTGGCCGCCTTTAACTCTCTTCCAACCATC 657 consensus_4261#1 TTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTC 243 *** *** *** * * *** * * * ** * ** * ** consensus_4261#0 CCCAATACTAGTCAGCATAGCGCGTCGTGGTAATCAGCGTTCAAGCATACGTAATACGTG 717 consensus_4261#1 TCG-----TAACCCGTCTGATGTGCAACGGT---CAGTCGACAAGCCTTCATG-TGCATA 294 * ** * * * * * *** *** ***** * * * * * * consensus_4261#0 GCCAAATAAAATGAATCAATCACACAAAAAAAAACTGATCTACACTTTGTATACACAGTT 777 consensus_4261#1 GTCGA-TGTCTTGCGCCGGTGACGTTTA-------TGACCTA-GTGTCGTCTCTGCAGGT 345 * * * * ** * * ** * *** *** * ** * *** * consensus_4261#0 ATAGATAATGAAAATACATTGAGAAAATATGAAATC 813 consensus_4261#1 CGAGGTTGCCCATCTGCGTGAGGAA----------- 370 ** * * * * * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||