These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [AACTAAAGTAAGTGATTAAGCATAACTTTTCATGTGTATGCAGTAACTGTTCTATTGTAATCAGATTCATCGAGAAATGACTTCAATTTGTCTACTGACTATCATGTGGATACATCTGCGAGTAAAGGCTTCCTGTTATAGCAATTTGCTTGAGTGCCCTGTTTGATATATGAAGTTATAAGACCGCCAATCAGAGAGCAGTGAATTATCGATCAGAGCAATAATACACAAAATCGTATGAGCAGTCTTAAGTACTTATCAGTCTTGCTTTCTGCCTAGCCCAGCCAGTTAAGTCCAGAACACCAATAGCAGCCTCTGCAATATGAATCATTATTCTCAAACATACTGAGTCTATATACCAAACAGACTGACCACATCGTACAAATAAAATAGGAAATAACATTTGTACAAGATTTGGCCAAATGTGGCTGTGAATGTAGGAGGCAGCAATTAATAGACTAGGGATAACTCAGGAATGGTAAATCGTATAATAATAGTCTATAGGTCAAAATAAAG] [+] EMBL CD088155 [AACTAAAGTAAGTGATTAAGCATAACTTTTCATGTGTATGCAGTAACTGTTCTATTGTAATCAGATTCATCGAGAAATGACTTCAATTTGTCTACTGACTATCATGTGGATACATCTGCGAGTAAAGGCTTCCTGTTATAGCAATTTGCTTGAGTGCCCTGTTTGATATATGAAGTTATAAGACCGCCAATCAGAGAGCAGTGAATTATCGATCAGAGCAATAATACACAAAATCGTATGAGCAGTCTTAAGTACTTATCAGTCTTGCTTTCTGCCTAGCCCAGCCAGTTAAGTCCAGAACACCAATAGCAGCCTCTGCAATATGAATCATTATTCTCAAACATACTGAGTCTATATACCAAACAGACTGACCACATCGTACAAATAAAATAGGAAATAACATTTGTACAAGATTTGGCCAAATGTGGCTGTGAATGTAGGAGGCAGCAATTAATAGACTAGGGATAACTCAGGAATGGTAAATCGTATAATAATAGTCTATAGGTCAAAATAAAG] consensusID : consensus_4273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [GTAGACATACTGAGTTTATATGCCAAACAGACTGACCACTTCGTATCGATGAAATAGGAAATAACATTTGTACAAGATTTAGCTAAATATGGCTGTGAATGTGGGAGGCAGAAATTAATAGACTAGGGATAACTCAAGAATGGTAAATCGTACAATAATAGTCTATAGGTCAAAATAAAGCTTATAAGGGGAACATGAGTATGGATAGTTTAGTTATATAGCAATTATACGACAATAAATATATGCATAATACTGGTCCATAAATGGATCGCAAAGTTACCATTCACCATTGTTATCGGGACAACAGACGGATCGTATCTAACTACCGGCCCGTCAGCCTAACTAGCATGGTCGTTAAGATTCGTACAATCTGTTAACTCCCGAACAACATGGGTTTCGTAACAACG] [-] EMBL CD060840 [GTAGACATACTGAGTTTATATGCCAAACAGACTGACCACTTCGTATCGATGAAATAGGAAATAACATTTGTACAAGATTTAGCTAAATATGGCTGTGAATGTGGGAGGCAGAAATTAATAGACTAGGGATAACTCAAGAATGGTAAATCGTACAATAATAGTCTATAGGTCAAAATAAAGCTTATAAGGGGAACATGAGTATGGATAGTTTAGTTATATAGCAATTATACGACAATAAATATATGCATAATACTGGTCCATAAATGGATCGCAAAGTTACCATTCACCATTGTTATCGGGACAACAGACGGATCGTATCTAACTACCGGCCCGTCAGCCTAACTAGCATGGTCGTTAAGATTCGTACAATCTGTTAACTCCCGAACAACATGGGTTTCGTAACAACG] consensusID : consensus_4273#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [GAATTCGGCACGAGGAGAATGTCAACTTGTTCTCTATTCTATTATTTATTTTTTTAAAAATGGCATTATTCATGACTAAACTATTATCAAATTTGTATCTATAATGCATGTCTTAAACAATATCATAATGTTTGCATGTATATATCCTGCTTGAACTGCACATACAAATAATACCCCCATATATTAAGTCAGTCAATCA] [+] EMBL CD077503 [GAATTCGGCACGAGGAGAATGTCAACTTGTTCTCTATTCTATTATTTATTTTTTTAAAAATGGCATTATTCATGACTAAACTATTATCAAATTTGTATCTATAATGCATGTCTTAAACAATATCATAATGTTTGCATGTATATATCCTGCTTGAACTGCACATACAAATAATACCCCCATATATTAAGTCAGTCAATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4273#0 AACTAAAGTAAGTGATTAAGCATAACTTTTCATGTGTATGCAGTAACTGTTCTATTGTAA 60 consensus_4273#1 -----------GTAGACATAC-TGAGTTTATATGC-CAAACAG--ACTGACCACTTCGTA 45 consensus_4273#2 ------------------------------------------------------------ consensus_4273#0 TCAGATTCATCGAGAAATGACTTCAATTTGTCTACTGACTATCATGTGGATACATCTGCG 120 consensus_4273#1 TC-GATGAAATAGGAAATAAC----ATTTGTACAAGATTTAGC---TAAATATGGCTGTG 97 consensus_4273#2 ------------------------------------------------------------ consensus_4273#0 AGTAAAGGCTTCCTGTTATAGCAATTTGCTTGAGTGCCCTGTTTGATATATGAAGTTATA 180 consensus_4273#1 AATGTGGGAGGCAGAAATTAATAGACT-----AGGGATAACTCAAGAATGGTAAATCGTA 152 consensus_4273#2 --------------------------------------------GAATTCGGCACGAGGA 16 * * * consensus_4273#0 AGACCGCCAATCAGAGAGCAGTGAATTATCGATCAGAGCAATAATACACAAAATCGTATG 240 consensus_4273#1 CAATAATAGTCTATAGGTCAAAATAAAGCTTATAAGGGGAACATGA---------GTATG 203 consensus_4273#2 GAATGTCAACTTGTTCTCTATTCTATTATTTATTTTTTTAAAAATG---------GCATT 67 * * * ** ** * * ** consensus_4273#0 AGCAGTC-TTAAGTACTTATCAGTCTTGCTTTC-TGCCTAGCCCAGCCAGTTAAGTCCAG 298 consensus_4273#1 GATAGT--TTAGTTATATAGCAATTATACGACAATAAATATATGCATAATACTGGTCCAT 261 consensus_4273#2 ATTCATGACTAAACTATTATCAAATTTGTATCTATAA-TGCATGTCTTAAACAATATCAT 126 * ** ** ** * * * * ** consensus_4273#0 AACACCAATAGCAGCCTCTGCAATATGAATCATTATTCTCAAACATACTGAGTCTATATA 358 consensus_4273#1 AA-ATGGATCGCAAAGT---TACCATTCACCATTGTTATCGGGACAACAGACGGATCGTA 317 consensus_4273#2 AATGTTTGCATGTATATATCCTGCTTGAACTGCACATACAAATAATAC---CCCCATATA 183 ** * * * * ** ** consensus_4273#0 CCAAACAGACTGACCACATCGTACAAATAAAATAGGAAATAACATTTGTACAAGATTTGG 418 consensus_4273#1 TCTAACT-ACCGGCCCGTCAGCCTAACTAGCATGGTCGTTAAGATTCGTACAA---TCTG 373 consensus_4273#2 TTAAGTCAGTCAATCA-------------------------------------------- 199 * * consensus_4273#0 CCAAATGTGGCTGTGAATGTAGGAGGCAGCAATTAATAGACTAGGGATAACTCAGGAATG 478 consensus_4273#1 TTAACTCCCGAACAACATGGGTTTCGTAACAACG-------------------------- 407 consensus_4273#2 ------------------------------------------------------------ consensus_4273#0 GTAAATCGTATAATAATAGTCTATAGGTCAAAATAAAG 516 consensus_4273#1 -------------------------------------- consensus_4273#2 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||