These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 478 fasta sequence [GGAATAAAAGAAATTAGAACAACCATTTAAAAAATGCGCGATCATGAAAGACAAATTTTTCTTTAGGGGAGAAAAAATTGATTCATTTATTTGGTTATTGATTGATAGGATCAATGAATGACAAAAAATAACTGGCGCAGTGACAAGAAATATTCACAATATCAAATATGCATCTGAGCACATTTGATAATGAAAAATAACGGTAAACTGATAGGGAAAAACAATCAACTTTTCCTTTTTTTTTAATAAACAATTATTGATAAATATTCATGACCATAATTCAACAGTACAGTGTTTATTTGAGCTTTTACTTGTTAATTTATACTGTTTAGTATATTCAGTTGTAGTCATGTTAGGCTTTGGATTGTGTTTTTTACCATGATAATTTGTATTATTGTTGGCTTTTATATATGCTGCTGTTGTTGATGATGATGATGGTGAACTGTTTAAACTATTATTATTGGCATTATTATTCTCA] [+] EMBL CD066653 [GGAATAAAAGAAATTAGAACAACCATTTAAAAAATGCGCGATCATGAAAGACAAATTTTTCTTTAGGGGAGAAAAAATTGATTCATTTATTTGGTTATTGATTGATAGGATCAATGAATGACAAAAAATAACTGGCGCAGTGACAAGAAATATTCACAATATCAAATATGCATCTGAGCACATTTGATAATGAAAAATAACGGTAAACTGATAGGGAAAAACAATCAACTTTTCCTTTTTTTTTAATAAACAATTATTGATAAATATTCATGACCATAATTCAACAGTACAGTGTTTATTTGAGCTTTTACTTGTTAATTTATACTGTTTAGTATATTCAGTTGTAGTCATGTTAGGCTTTGGATTGTGTTTTTTACCATGATAATTTGTATTATTGTTGGCTTTTATATATGCTGCTGTTGTTGATGATGATGATGGTGAACTGTTTAAACTATTATTATTGGCATTATTATTCTCA] [+] EMBL CD066651 [GGAATAAAAGAAATTAGAACAACCATTTAAAAAATGCGCGATCATGAAAGACAAATTTTTCTTTAAGGGAGAAAAAAGTGATTCATTTATTTGGTTATTGATTGATAGGATCAATGAATGACATAAAATAACTGGCGCAGTGACAAGAAATATTCACAATATCAAATATGCATATGAGCACATTTGATAATGAAAAATAACGGTACACTGATAGGGAAAAACAATCAACTTTTCCTTTTTTTTTAATAAACAATTATTGATAAATATTCATGACCATAATTCAACAGTACAGTGTTTATTTGAGCTTTTACTTGTTAATATATACTGTATAGTATATTCAGTT ] consensusID : consensus_4275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [TTCATCGTGATACAACAACATACTTTCTAATAAATAGTCGATAAATGTAAAACTATAACATTTTATATCTTTAATTTACTCTTTTTTTTCTCCGATTTTCATTTCCCACAGAATATAACTCTATCCAAAAACATTTCAACTATTTATAGAATCGCATAAATTATTCTCTCTTTCAACCTTATCAAACTAATAACACATTATGACATTATTCAGAATTTATTCTGTACACCAATCTATTCATAAGTGAGAATAATAATGACAATAATAATAGTT] [+] EMBL CD068471 [TTCATCGTGATACAACAACATACTTTCTAATAAATAGTCGATAAATGTAAAACTATAACATTTTATATCTTTAATTTACTCTTTTTTTTCTCCGATTTTCATTTCCCACAGAATATAACTCTATCCAAAAACATTTCAACTATTTATAGAATCGCATAAATTATTCTCTCTTTCAACCTTATCAAACTAATAACACATTATGACATTATTCAGAATTTATTCTGTACACCAATCTATTCATAAGTGAGAATAATAATGACAATAATAATAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4275#0 GGAATAAAAGAAATTAGAACAACCATTTAAAAAATGCGCGATCATGAAAGACAAATTTTT 60 consensus_4275#1 ------------------------------------------------------------ consensus_4275#0 CTTTAGGGGAGAAAAAATTGATTCATTTATTTGGTTATTGATTGATAGGATCAATGAATG 120 consensus_4275#1 ------------------------------------------------------------ consensus_4275#0 ACAAAAAATAACTGGCGCAGTGACAAGAAATATTCACAATATCA-AATATGCATCTGAGC 179 consensus_4275#1 -----------------------------TTCATCGTGATACAACAACATACTTTCTAAT 31 * ** *** * ** ** * * * consensus_4275#0 ACATTTGATAATGAAAAATAACGGTAAACTGATAGGGAAAAACAATCAACTTTTCCTTTT 239 consensus_4275#1 AAA--TAGTCGATAAATGTAAAACTATAACATTTTATATCTTTAATTTACTCTTT-TTTT 88 * * * * *** *** ** * * * *** *** ** **** consensus_4275#0 TTTTTAATAAACAATTATTGATAAATATTCATGACCATAATTCAACAGTACAGTGTTTAT 299 consensus_4275#1 TCTCCGATTTTCATTTCCCACAGAATAT-----AACTCTATCCAAAAACATTTCAACTAT 143 * * ** ** ** ***** * * ** *** * * *** consensus_4275#0 TTGAGCTTTTACTTGTTAATTTATACTGTTTAGTATATTCAGTTGTAGTCATGTTAGGCT 359 consensus_4275#1 TTATAGAATCGCAT---AAATTATTCTCTCTTTCA-ACCTTATCAAACTAATAACACATT 199 ** * * * ** **** ** * * * * * * * ** * * consensus_4275#0 TTGGATTGTGTTTTTTACCATGATAATTTGTATTATTGTTGGCTTTTATATATGCTGCTG 419 consensus_4275#1 ----ATGACATTATTCAGAATT-TATTCTGTACACCAATCTA--TTCATAAGTGAGAATA 252 ** ** ** * ** ** * **** * ** *** ** * consensus_4275#0 TTGTTGATGATGATGATGGTGAACTGTTTAAACTATTATTATTGGCATTATTATTCTCA 478 consensus_4275#1 ATAATGACAATAATAATAGTT-------------------------------------- 273 * *** ** ** ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||