cluster # 4284

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Schistosoma mansoni
cluster # 4284 cluster # 4284 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4284#0 length = 447 sequences # 2

consensus_4284#1 length = 440 sequences # 1

consensusID : consensus_4284#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 447
fasta sequence

                              [GGATTAACTACTTTTGGAGATGTGTACAAAATATAGTTACTCAAATAGGCAAGAAGAATCCTCAATCAAAACGAAATTTAATTCTATGGGAAGATGTCGTAGAACATGTAACCGACCTTAATAAATCACTGTTCGTTCAAGTCTGGAAAAGTAATTCATCATTTCATTTATCGAAAGGTTTCAATATTATCTATTCAATTTGCTGGTATTTGGATTTACTTAATGATATTAAGCGTTGGACAGATTTTTATCTGTGTGATCCATCCGATCATGCTCCACTGGAAACTGAACGACAAATTCTAGGTGGTGAAGCTTGCATGTGGAGTGAATACCAATCGGATTATACAGTTCTAACAAAAATTTGGCCGGTTACAAGAGCCGTTGCAGAACGTCTTTGGAGTGCCAAAGAAGTAAATGACTTAGAATTTGCCGGTCCGCGCATTGAAG]

[+] EMBL CD165400             [GGATTAACTACTTTTGGAGATGTGTACAAAATATAGTTACTCAAATAGGCAAGAAGAATCCTCAATCAAAACGAAATTTAATTCTATGGGAAGATGTCGTAGAACATGTAACCGACCTTAATAAATCACTGTTCGTTCAAGTCTGGAAAAGTAATTCATCATTTCATTTATCGAAAGGTTTCAATATTATCTATTCAATTTGCTGGTATTTGGATTTACTTAATGATATTAAGCGTTGGACAGATTTTTATCTGTGTGATCCATCCGATCATGCTCCACTGGAAACTGAACGACAAATTCTAGGTGGTGAAGCTTGCATGTGGAGTGAATACCAATCGGATTATACAGTTCTAACAAAAATTT                                                                                    ]
[-] EMBL CD190555             [                         ACAAAATATAGTTACTCAAATAGGCAAGAAGAATCCTCAATCAAAACGAAATTTAATTCTATGGGAAGATGTCGTAGAACATGTAACCGACCTTAATAAATCACTGTTCGTTCAAGTCTGGAAAAGTTATTCATCATTTCATTTATCGAAAGGTTTCAATATTATCTATTCAATTTGCTGGTATTTGGATTTACTTAATGATATTAAGCGTTGGACAGATTTTTATCTGTGTGATCCATCCGATCATGCTCCACTGGAAACTGAACGACAAATTCTAGGTGGTGAAGCTTGCATGTGGAGTGAATACCAATCGGATTATACAGTTCTAACAAAAATTTGGCCGGTTACAAGAGCCGTTGCAGAACGTCTTTGGAGTGCCAAAGAAGTAAATGACTTAGAATTTGCCGGTCCGCGCATTGAAG]




>consensus_4284#0
GGATTAACTACTTTTGGAGATGTGTACAAAATATAGTTACTCAAATAGGCAAGAAGAATC
CTCAATCAAAACGAAATTTAATTCTATGGGAAGATGTCGTAGAACATGTAACCGACCTTA
ATAAATCACTGTTCGTTCAAGTCTGGAAAAGTAATTCATCATTTCATTTATCGAAAGGTT
TCAATATTATCTATTCAATTTGCTGGTATTTGGATTTACTTAATGATATTAAGCGTTGGA
CAGATTTTTATCTGTGTGATCCATCCGATCATGCTCCACTGGAAACTGAACGACAAATTC
TAGGTGGTGAAGCTTGCATGTGGAGTGAATACCAATCGGATTATACAGTTCTAACAAAAA
TTTGGCCGGTTACAAGAGCCGTTGCAGAACGTCTTTGGAGTGCCAAAGAAGTAAATGACT
TAGAATTTGCCGGTCCGCGCATTGAAG

consensusID : consensus_4284#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [TCACGAGGGAGAAAATATATATGTCAACATTCGTTAAGGTTAGGTTAGACAGCAAACAGCTGGAATTTATTGGATAAACTAGATTAACGAACACTGGATGAGTAGAAAACTACTTATTCAAATAGTAAACTATTCATTGAATTCTATAATGTACTAGCAGAAAAATAAAACGGAGATAATGAGTATATTACAGTTAATTAAACAAGGAAAACAACTGTGGGAAAGCATGATTAATTACCAAATTTTTGTTAGAACTGTATAATCCGATTGGTATTCACTCCACATGCAAGCTTCACCACCTAGAATTTGTCGTTCAGTTTCCAGTGGAGCATCTGTACAAAAAAAATACAACCACCGCCGCAATAACAAAAAGGTAAGTCGATGTCCGATATTAATAATAATGATAATAGCAGCAAATCATCCTACTTCCTTTCATAGTT]

[+] EMBL CD168658             [TCACGAGGGAGAAAATATATATGTCAACATTCGTTAAGGTTAGGTTAGACAGCAAACAGCTGGAATTTATTGGATAAACTAGATTAACGAACACTGGATGAGTAGAAAACTACTTATTCAAATAGTAAACTATTCATTGAATTCTATAATGTACTAGCAGAAAAATAAAACGGAGATAATGAGTATATTACAGTTAATTAAACAAGGAAAACAACTGTGGGAAAGCATGATTAATTACCAAATTTTTGTTAGAACTGTATAATCCGATTGGTATTCACTCCACATGCAAGCTTCACCACCTAGAATTTGTCGTTCAGTTTCCAGTGGAGCATCTGTACAAAAAAAATACAACCACCGCCGCAATAACAAAAAGGTAAGTCGATGTCCGATATTAATAATAATGATAATAGCAGCAAATCATCCTACTTCCTTTCATAGTT]




>consensus_4284#1
TCACGAGGGAGAAAATATATATGTCAACATTCGTTAAGGTTAGGTTAGACAGCAAACAGC
TGGAATTTATTGGATAAACTAGATTAACGAACACTGGATGAGTAGAAAACTACTTATTCA
AATAGTAAACTATTCATTGAATTCTATAATGTACTAGCAGAAAAATAAAACGGAGATAAT
GAGTATATTACAGTTAATTAAACAAGGAAAACAACTGTGGGAAAGCATGATTAATTACCA
AATTTTTGTTAGAACTGTATAATCCGATTGGTATTCACTCCACATGCAAGCTTCACCACC
TAGAATTTGTCGTTCAGTTTCCAGTGGAGCATCTGTACAAAAAAAATACAACCACCGCCG
CAATAACAAAAAGGTAAGTCGATGTCCGATATTAATAATAATGATAATAGCAGCAAATCA
TCCTACTTCCTTTCATAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4284#0      -------GGATTAACTACTTTTGGAGATGTGTACAAAATATAGTTACTCAAATAGGCAAG 53
consensus_4284#1      TCACGAGGGAGAAAATATATATGTCAACATTCGTTAAGGTTAGGTTAGACAGCAAACAGC 60
                             ***  ** **  * **   *  *     **   *** *     *  *  **  

consensus_4284#0      AAGAATCCTCAATCAAAACGAAATTTAATTCTATGGGAAGATGTCGTAGAACATGTAACC 113
consensus_4284#1      TGGAATTTATTGGATAAACTAGATTAACGAACACTGGATGA----GTAGAAAAC--TACT 114
                        ****         **** * *** *     *  *** **    ****** *    ** 

consensus_4284#0      GACCTTAATAAATCACTGTTCGTTCAAGTCTGGAAAAGTAATTCATCATTTCATTTATCG 173
consensus_4284#1      TATTCAAATAGTAAACTATTCATTGAATTCT--ATAATGTACTAGCAGAAAAATAAAACG 172
                       *    ****    *** *** ** ** ***  * **   * *         **  * **

consensus_4284#0      AAAGGTTTCAATATTATCTATTCAATTTGCTGGTATTTGGATTTACTTAATGATATTAAG 233
consensus_4284#1      GAGATAATGAGTATATTACAGTTAATTAAACAAGGAAAACAACTGTGGGAAAGCATGATT 232
                       *     * * ***  *  * * ****             *  *     *    ** *  

consensus_4284#0      CGTTGGACAGATTTTTAT-----CTGTGTGATCCATCCGATCAT-GCTCCAC-TGGAAAC 286
consensus_4284#1      AATTAC-CAAATTTTTGTTAGAACTGTATAATCCGATTGGTATTCACTCCACATGCAAGC 291
                        **   ** ****** *     **** * ****    * *  *  ****** ** ** *

consensus_4284#0      TGAACGACAAATTCTAGGTGGTGAAGCTTGCATGTGGAGTGAATAC-CAATCGGATTATA 345
consensus_4284#1      TTCACCACCTAGAATTTGTCGTTCAGTTTCCA-GTGGAGCATCTGTACAAAAAAAATACA 350
                      *  ** **  *   *  ** **  ** ** ** ******    *   ***    * ** *

consensus_4284#0      ----CAGTTCTAACAAAAATTTGGCCGGTTACAAGAGCCGTTGCAGAACGTCTTTGGAGT 401
consensus_4284#1      ACCACCGCCGCAATAACAAAAAGGTAAGT--CGATGTCCGATATTAATAATAATGATAAT 408
                          * *    ** ** **   **   **  * *   *** *    *   *  *   * *

consensus_4284#0      GCCAAAGAAGTAAATGACTTAGAATTTGCCGGTCCGCGCATTGAAG 447
consensus_4284#1      AGCAGCAAATCATCCTACTTC--CTTTCATAGTT------------ 440
                        **   **  *    ****    ***    **