These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4285#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [CTGTCATCAACCAACTTACGTATAACAAATTTATTATCACGTCACACTAACAAAACAAAACACTTACAGTGTAAACGCTTTTCTCACTATATCCTCAGTAGTACTAATTAGTAATGTAATGTCAAACAACACTCGCAATAATATCAAATTTATCCACACACATTAGCTACATATATATAGATATATAAATATACATACAAATACAAATACAAATACAAATATATACTTCACTCACATCAAACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTTCTACTACTACTACTACTACTACTGCTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGCGGTACTTTTATCATTATCATTGCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTCTGCACACTACCAATTTTAAAGTAA] [+] EMBL CD084566 [CTGTCATCAACCAACTTACGTATAACAAATTTATTATCACGTCACACTAACAAAACAAAACACTTACAGTGTAAACGCTTTTCTCACTATATCCTCAGTAGTACTAATTAGTAATGTAATGTCAAACAACACTCGCAATAATATCAAATTTATCCACACACATTAGCTACATATATATAGATATATAAATATACATACAAATACAAATACAAATACAAATATATACTTCACTCACATCAAACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTTCTACTACTACTACTACTACTACTGCTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGCGGTACTTTTATCATTATCATTGCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTCTGCACACTACCAATTTTAAAGTAA] consensusID : consensus_4285#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [AGCTGTACTACAAACCCTTAAAACCCTAAGGTTTGATAACTCAACGGCATCTTCGAATACTTCAGATGCGGAATATGAGAACTTGGAAGCATCTGAAAAACTTAGAGTATTTCACACTTTACCCACACTAGCCAGTAGTCTGGGTCCGGTGGATACACGTGAAAAACTCATACCTACAATCTCAGACGTTGTCTCCAACGCTATTGATGCTGGCGATGACGAAATTCTCATGGTTATAGCTCAAAAGCTGGGTTCTTTTGGTGATCTAGTTGGTGGTGCTGAACATATACCTTTAATTGTGCCCATCCTGGCAAATATCATATATTCCATCGAGGAAGTTGTTGTAGCCGAAGCTGCTTGTAATTCTCTGATAGCACTCCTTCCAAAGCTTCCAAATGATGTTGTGGATAGCACATTCGCCCCGATAAATGGCCAGTTCACAGGTTTAGGATCTTTAATATTATCAGTTCGACAACAAAGTTCAGAGAATGCTCGGGCATGT] [+] EMBL CD180836 [AGCTGTACTACAAACCCTTAAAACCCTAAGGTTTGATAACTCAACGGCATCTTCGAATACTTCAGATGCGGAATATGAGAACTTGGAAGCATCTGAAAAACTTAGAGTATTTCACACTTTACCCACACTAGCCAGTAGTCTGGGTCCGGTGGATACACGTGAAAAACTCATACCTACAATCTCAGACGTTGTCTCCAACGCTATTGATGCTGGCGATGACGAAATTCTCATGGTTATAGCTCAAAAGCTGGGTTCTTTTGGTGATCTAGTTGGTGGTGCTGAACATATACCTTTAATTGTGCCCATCCTGGCAAATATCATATATTCCATCGAGGAAGTTGTTGTAGCCGAAGCTGCTTGTAATTCTCTGATAGCACTCCTTCCAAAGCTTCCAAATGATGTTGTGGATAGCACATTCGCCCCGATAAATGGCCAGTTCACAGGTTTAGGATCTTTAATATTATCAGTTCGACAACAAAGTTCAGAGAATGCTCGGGCATGT] consensusID : consensus_4285#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence [CAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTGATTGAACTGACCTCTGATATCAGAATACGCTATCATCTAGTCAATTCGAACGGATGTAGGCAATGCACAGGTTGATCGAGTACTGACGATT] [+] EMBL SMAA85196 [CAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTGATTGAACTGACCTCTGATATCAGAATACGCTATCATCTAGTCAATTCGAACGGATGTAGGCAATGCACAGGTTGATCGAGTACTGACGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4285#1 --------------------------AGCTGTACTACAA----ACCCTTAAAACCCTAAG 30 consensus_4285#2 ------------------------------------------------------------ consensus_4285#0 CTGTCATCAACCAACTTACGTATAACAAATTTATTATCACGTCACACTAACAAAACAAAA 60 consensus_4285#1 GTTTGATAACTCAACGGCATCTTCGAATACTTCAGATGCGGAATATGAGAACTTGGAAGC 90 consensus_4285#2 ------------------------------------------------------------ consensus_4285#0 CACTTACAGTGTAAACGCTTTTCTCACTATATCCTCAGTAGTACTAATTAGTAATGTAAT 120 consensus_4285#1 ATCTGAAAA-ACTTAGAGTATTTCACACTTTACCCACACTAGCCAGTAGTCTGGGTCCGG 149 consensus_4285#2 ------------------------------------------------------------ consensus_4285#0 GTCAAACAACACTCGCAATAATATCAAATTTATCCACACACATTAGCTACATATATATAG 180 consensus_4285#1 -TGGATACACGTGAAAA-ACTCATACCTACAATCTCAGACGTTGTCTCCAACGCTATTGA 207 consensus_4285#2 ------------------------------------------------------------ consensus_4285#0 ATATATAAATATACATACAAATACAAATACAAATACAAATATATACTTCACTCACATCAA 240 consensus_4285#1 TGCTGGCGATGACGAAATTCTCATGGTTATAGCTCAAAAGCTGGGTTCTTTTGGTGATCT 267 consensus_4285#2 ------------------------------------------------------------ consensus_4285#0 ACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTAC 300 consensus_4285#1 AGTTGGTGGTGCTGAACATATACCTTTAATTGTGCCCATCCTGGCAAATATCATATATTC 327 consensus_4285#2 ----------------------------------CAAGACCGATTCAACCTTACCGGTTT 26 consensus_4285#0 TACTTCTACTACT--ACTACTACTACTACTGCTACAAGCCACATTCCA-GTCATTTACTC 357 * * * * * * consensus_4285#1 CATCGAGGAAGTTGTTGTAGCCGAAGCTGCTTGTAATTCT---CTGATAGCACTCCTTCC 384 consensus_4285#2 ATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTGATTGAACTGACCTC 86 consensus_4285#0 AACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAAC 417 * * * * * * * *** ** * consensus_4285#1 AAAGCTTCCAAATGATGTTGTGGA-TAGCACATTCGCCCCGATAAATGGCCAGTTCACAG 443 consensus_4285#2 TGA--TATCAGAATACGCTATCATCTAGTCAATTCGAACGGATG--TAGGCAATGCACAG 142 consensus_4285#0 TAA--TGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACA-CCTATCG 474 * * * * * * * ** ** * * consensus_4285#1 GTTTAGGATCTTTAATATTATCAGT-TCGACAACAAAGTTCAGAGAATGCTCGGGCATGT 502 consensus_4285#2 GTTGA-----TCGAGTACTGACGAT-T--------------------------------- 163 consensus_4285#0 CCTTATTATCATCAATAATATTTCTGTCAGCGGTACTTTTATCATTATCATTGCTACTAT 534 * * * ** * * * consensus_4285#1 ------------------------------------------------------------ consensus_4285#2 ------------------------------------------------------------ consensus_4285#0 CGCTATTATCATTTTGGCTATTATTATTATTATTATTTCTGCACACTACCAATTTTAAAG 594 consensus_4285#1 --- consensus_4285#2 --- consensus_4285#0 TAA 597 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||