cluster # 4285

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Schistosoma mansoni
cluster # 4285 cluster # 4285 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4285#0 length = 597 sequences # 1

consensus_4285#1 length = 502 sequences # 1
consensus_4285#2 length = 163 sequences # 1

consensusID : consensus_4285#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [CTGTCATCAACCAACTTACGTATAACAAATTTATTATCACGTCACACTAACAAAACAAAACACTTACAGTGTAAACGCTTTTCTCACTATATCCTCAGTAGTACTAATTAGTAATGTAATGTCAAACAACACTCGCAATAATATCAAATTTATCCACACACATTAGCTACATATATATAGATATATAAATATACATACAAATACAAATACAAATACAAATATATACTTCACTCACATCAAACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTTCTACTACTACTACTACTACTACTGCTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGCGGTACTTTTATCATTATCATTGCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTCTGCACACTACCAATTTTAAAGTAA]

[+] EMBL CD084566             [CTGTCATCAACCAACTTACGTATAACAAATTTATTATCACGTCACACTAACAAAACAAAACACTTACAGTGTAAACGCTTTTCTCACTATATCCTCAGTAGTACTAATTAGTAATGTAATGTCAAACAACACTCGCAATAATATCAAATTTATCCACACACATTAGCTACATATATATAGATATATAAATATACATACAAATACAAATACAAATACAAATATATACTTCACTCACATCAAACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTTCTACTACTACTACTACTACTACTGCTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGCGGTACTTTTATCATTATCATTGCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTCTGCACACTACCAATTTTAAAGTAA]




>consensus_4285#0
CTGTCATCAACCAACTTACGTATAACAAATTTATTATCACGTCACACTAACAAAACAAAA
CACTTACAGTGTAAACGCTTTTCTCACTATATCCTCAGTAGTACTAATTAGTAATGTAAT
GTCAAACAACACTCGCAATAATATCAAATTTATCCACACACATTAGCTACATATATATAG
ATATATAAATATACATACAAATACAAATACAAATACAAATATATACTTCACTCACATCAA
ACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTAC
TACTTCTACTACTACTACTACTACTACTGCTACAAGCCACATTCCAGTCATTTACTCAAC
TTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAA
TGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTAT
TATCATCAATAATATTTCTGTCAGCGGTACTTTTATCATTATCATTGCTACTATCGCTAT
TATCATTTTGGCTATTATTATTATTATTATTTCTGCACACTACCAATTTTAAAGTAA

consensusID : consensus_4285#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [AGCTGTACTACAAACCCTTAAAACCCTAAGGTTTGATAACTCAACGGCATCTTCGAATACTTCAGATGCGGAATATGAGAACTTGGAAGCATCTGAAAAACTTAGAGTATTTCACACTTTACCCACACTAGCCAGTAGTCTGGGTCCGGTGGATACACGTGAAAAACTCATACCTACAATCTCAGACGTTGTCTCCAACGCTATTGATGCTGGCGATGACGAAATTCTCATGGTTATAGCTCAAAAGCTGGGTTCTTTTGGTGATCTAGTTGGTGGTGCTGAACATATACCTTTAATTGTGCCCATCCTGGCAAATATCATATATTCCATCGAGGAAGTTGTTGTAGCCGAAGCTGCTTGTAATTCTCTGATAGCACTCCTTCCAAAGCTTCCAAATGATGTTGTGGATAGCACATTCGCCCCGATAAATGGCCAGTTCACAGGTTTAGGATCTTTAATATTATCAGTTCGACAACAAAGTTCAGAGAATGCTCGGGCATGT]

[+] EMBL CD180836             [AGCTGTACTACAAACCCTTAAAACCCTAAGGTTTGATAACTCAACGGCATCTTCGAATACTTCAGATGCGGAATATGAGAACTTGGAAGCATCTGAAAAACTTAGAGTATTTCACACTTTACCCACACTAGCCAGTAGTCTGGGTCCGGTGGATACACGTGAAAAACTCATACCTACAATCTCAGACGTTGTCTCCAACGCTATTGATGCTGGCGATGACGAAATTCTCATGGTTATAGCTCAAAAGCTGGGTTCTTTTGGTGATCTAGTTGGTGGTGCTGAACATATACCTTTAATTGTGCCCATCCTGGCAAATATCATATATTCCATCGAGGAAGTTGTTGTAGCCGAAGCTGCTTGTAATTCTCTGATAGCACTCCTTCCAAAGCTTCCAAATGATGTTGTGGATAGCACATTCGCCCCGATAAATGGCCAGTTCACAGGTTTAGGATCTTTAATATTATCAGTTCGACAACAAAGTTCAGAGAATGCTCGGGCATGT]




>consensus_4285#1
AGCTGTACTACAAACCCTTAAAACCCTAAGGTTTGATAACTCAACGGCATCTTCGAATAC
TTCAGATGCGGAATATGAGAACTTGGAAGCATCTGAAAAACTTAGAGTATTTCACACTTT
ACCCACACTAGCCAGTAGTCTGGGTCCGGTGGATACACGTGAAAAACTCATACCTACAAT
CTCAGACGTTGTCTCCAACGCTATTGATGCTGGCGATGACGAAATTCTCATGGTTATAGC
TCAAAAGCTGGGTTCTTTTGGTGATCTAGTTGGTGGTGCTGAACATATACCTTTAATTGT
GCCCATCCTGGCAAATATCATATATTCCATCGAGGAAGTTGTTGTAGCCGAAGCTGCTTG
TAATTCTCTGATAGCACTCCTTCCAAAGCTTCCAAATGATGTTGTGGATAGCACATTCGC
CCCGATAAATGGCCAGTTCACAGGTTTAGGATCTTTAATATTATCAGTTCGACAACAAAG
TTCAGAGAATGCTCGGGCATGT

consensusID : consensus_4285#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence

                              [CAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTGATTGAACTGACCTCTGATATCAGAATACGCTATCATCTAGTCAATTCGAACGGATGTAGGCAATGCACAGGTTGATCGAGTACTGACGATT]

[+] EMBL SMAA85196            [CAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTGATTGAACTGACCTCTGATATCAGAATACGCTATCATCTAGTCAATTCGAACGGATGTAGGCAATGCACAGGTTGATCGAGTACTGACGATT]




>consensus_4285#2
CAAGACCGATTCAACCTTACCGGTTTATCAGAGCAAGTTCCTGAATACCGTGATGCTCTC
GACATGATACTGATTGAACTGACCTCTGATATCAGAATACGCTATCATCTAGTCAATTCG
AACGGATGTAGGCAATGCACAGGTTGATCGAGTACTGACGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4285#1      --------------------------AGCTGTACTACAA----ACCCTTAAAACCCTAAG 30
consensus_4285#2      ------------------------------------------------------------
consensus_4285#0      CTGTCATCAACCAACTTACGTATAACAAATTTATTATCACGTCACACTAACAAAACAAAA 60
                                                                                  

consensus_4285#1      GTTTGATAACTCAACGGCATCTTCGAATACTTCAGATGCGGAATATGAGAACTTGGAAGC 90
consensus_4285#2      ------------------------------------------------------------
consensus_4285#0      CACTTACAGTGTAAACGCTTTTCTCACTATATCCTCAGTAGTACTAATTAGTAATGTAAT 120
                                                                                  

consensus_4285#1      ATCTGAAAA-ACTTAGAGTATTTCACACTTTACCCACACTAGCCAGTAGTCTGGGTCCGG 149
consensus_4285#2      ------------------------------------------------------------
consensus_4285#0      GTCAAACAACACTCGCAATAATATCAAATTTATCCACACACATTAGCTACATATATATAG 180
                                                                                  

consensus_4285#1      -TGGATACACGTGAAAA-ACTCATACCTACAATCTCAGACGTTGTCTCCAACGCTATTGA 207
consensus_4285#2      ------------------------------------------------------------
consensus_4285#0      ATATATAAATATACATACAAATACAAATACAAATACAAATATATACTTCACTCACATCAA 240
                                                                                  

consensus_4285#1      TGCTGGCGATGACGAAATTCTCATGGTTATAGCTCAAAAGCTGGGTTCTTTTGGTGATCT 267
consensus_4285#2      ------------------------------------------------------------
consensus_4285#0      ACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTAC 300
                                                                                  

consensus_4285#1      AGTTGGTGGTGCTGAACATATACCTTTAATTGTGCCCATCCTGGCAAATATCATATATTC 327
consensus_4285#2      ----------------------------------CAAGACCGATTCAACCTTACCGGTTT 26
consensus_4285#0      TACTTCTACTACT--ACTACTACTACTACTGCTACAAGCCACATTCCA-GTCATTTACTC 357
                                                        *    *       *  * *     * 

consensus_4285#1      CATCGAGGAAGTTGTTGTAGCCGAAGCTGCTTGTAATTCT---CTGATAGCACTCCTTCC 384
consensus_4285#2      ATCAGAGCAAGTTCCTGAATACCGTGATGCTCTCGACATGATACTGATTGAACTGACCTC 86
consensus_4285#0      AACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAAC 417
                           *   *  *     *      *   *     *       ***     **      *

consensus_4285#1      AAAGCTTCCAAATGATGTTGTGGA-TAGCACATTCGCCCCGATAAATGGCCAGTTCACAG 443
consensus_4285#2      TGA--TATCAGAATACGCTATCATCTAGTCAATTCGAACGGATG--TAGGCAATGCACAG 142
consensus_4285#0      TAA--TGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACA-CCTATCG 474
                        *  *          *        *     * *    *  **       **    *  *

consensus_4285#1      GTTTAGGATCTTTAATATTATCAGT-TCGACAACAAAGTTCAGAGAATGCTCGGGCATGT 502
consensus_4285#2      GTTGA-----TCGAGTACTGACGAT-T--------------------------------- 163
consensus_4285#0      CCTTATTATCATCAATAATATTTCTGTCAGCGGTACTTTTATCATTATCATTGCTACTAT 534
                        * *        * ** *     * *                                 

consensus_4285#1      ------------------------------------------------------------
consensus_4285#2      ------------------------------------------------------------
consensus_4285#0      CGCTATTATCATTTTGGCTATTATTATTATTATTATTTCTGCACACTACCAATTTTAAAG 594
                                                                                  

consensus_4285#1      ---
consensus_4285#2      ---
consensus_4285#0      TAA 597