These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4293#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 751 fasta sequence [TCGAGGACCTAATATTTCAAAAATGTCATCTGATGGTGGTTTTGATGGTTACTTTCTGCTGTCAGTAACTGGACAGATTGAAAAGGCTGACTTCCCACTCCATGACTATATATGGTGCAAGTACTGCTTCGCAACTGGTCAAGACTGGACCAAATTAACCGGCCTCGATGAAGGAATGACTCAAACCTCTATTAAAGGTGTCGGTTGCAACGATCAGAACAATTTTAACTTTCCGATTGATATTTCATGGAAATCCACAAACCCATTCGGTTGGCCTCAAATCGTTCTTCATGCTTATGGCGTTGACGTCTTTGGCAAGGATGTTTTACGAGGTTATGGTGCCGTTCACGTCCCAATGAAGATCGGAAGCCACAGAAAAAGAGTTTCCATGTTTGTGCCTCAATCTTCTTCACAACTAATGAAATTGAATGCATGGTTAACTGGAAAAAGACCAGAGTTTCTTAATCCAAAAGTAATAGCTTGTGGTGAGGGTCGTGGAGTAACTAAAGTGCAAACCCAAGGCTTCGTAGATATCATATTCAATATCGCTGTAAAAAATCTACAGAATTTAGGTTATGCTAATGACAAGAAAAGGGAGACTNTAACAGAAGATTTATTGATGCTAATAAATAAAGATCCGATATAGAAATTATGGAAATGGTNTATTATTATTGGTATTATTAATACATAAGTTNCTCCCTTTTGNTAAGTGAACCCTGAT-AGATACTTGATAAATAAT-AATNATTTAGGT] [+] EMBL CD082229 [TCGAGGACCTAATATTTCAAAAATGTCATCTGATGGTGGTTTTGATGGTTACTTTCTGCTGTCAGTAACTGGACAGATTGAAAAGGCTGACTTCCCACTCCATGACTATATATGGTGCAAGTACTGCTTCGCAACTGGTCAAGACTGGACCAAATTAACCGGCCTCGATGAAGGAATGACTCAAACCTCTATTAAAGGTGTCGGTTGCAACGATCAGAACAATTTTAACTTTCCGATTGATATTTCATGGAAATCCACAAACCCATTCGGTTGGCCTCAAATCGTTCTTCATGCTTATGGCGTTGACGTCTTTGGCAAGGATGTTTTACGAGGTTATGGTGCCGTTCACGTCCCAATGAAGATCGGAAGCCACAGAAAAAGAGTTTCCATGTTTGTGCCTCAATCTTCTTCACAACTAATGAAATTGAATGCATGGTTAACTGGAAAAAGACCAGAGTTTCTTAATCCAAAAGTAATAGCTTGTGGTGAGGGTCGTGGAGTAACTAAAGTGCAAACCCAAGGCTTCGTAGATATCATATTCAATATCGCTGTAAAAAATCTACAGAATTTAGGTTATGCTAATGACAAGAAAAGGGAGACTNTAACAGAAGATTTATTGATGCTAATAAATAAAGATCCGATATAGAAATTATGGAAATGGTNTATTATTATTGGTATTATTAATACATAAGTTNCTCCCTTTTGNTAAGTGAACCCTGAT AGATACTTGATAAATAAT AATNATTTAGGT] [-] EMBL CD075840 [ GGAATGACTCAAACCTCTATTAAAGGTGTCGGTTGCAACGATCAGAACAATTTTAACTTTCCGATTGATATTTCATGGAAATCCACAAACCCATTCGGTTGGCCTCAAATCGTTCTTCATGCTTATGGCGTTGACGTCTTTGGCAAGGATGTTTTACGAGGTTATGGTGCCGTTCACGTCCCAATGAAGATCGGAAGCCACAGAAAAAGAGTTTCCATGTTTGTGCCTCAATCTTCTTCACAACTAATGAAATTGAATGCATGGTTAACTGGAAAAAGACCAGAGTTTCTTAATCCAAAAGTAATAGCTTGTGGTGAGGGTCGTGGAGTAACTAAAGTGCAAACCCAAGGCTTCGTAGATATCATATTCAATATCGCTGTAAAAAATCTACAGAATTTAGGTTATGCTAATGACAAGAAAAGGGAGACTTTAACAGAAGATTTATTGATGCTAATAAATAAAGATCCGATATAGAAATTATGGAAATGTTTTATTATTATTGTTATTATTATTACATAAGTTTCTCCCTTTTGTTAAGTGAA CCTGATAAGATACTTGATAAATAATAAATTATTTAGtt] consensusID : consensus_4293#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [GGCCTCGTAGATATCATATTCAATANCGCTGNAAAAAATCTACAGGATTTAGGTTATGCTAATGACNAGAAAAGGGAGACTTTAACAGGAGATTTATTGATGCTAATAAATAAAGAACCGATATAGNAATTATGGAAATGNTTTATTATTANTGNTATTATTATTACATAAGTTTCTCCCTTTTGTTAAGTGAACCTGATAAGATACTTGATAAATAATAAATTATTTAGTT] [-] EMBL SMT14398 [GGCCTCGTAGATATCATATTCAATANCGCTGNAAAAAATCTACAGGATTTAGGTTATGCTAATGACNAGAAAAGGGAGACTTTAACAGGAGATTTATTGATGCTAATAAATAAAGAACCGATATAGNAATTATGGAAATGNTTTATTATTANTGNTATTATTATTACATAAGTTTCTCCCTTTTGTTAAGTGAACCTGATAAGATACTTGATAAATAATAAATTATTTAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4293#0 TCGAGGACCTAATATTTCAAAAATGTCATCTGATGGTGGTTTTGATGGTTACTTTCTGCT 60 consensus_4293#1 ------------------------------------------------------------ consensus_4293#0 GTCAGTAACTGGACAGATTGAAAAGGCTGACTTCCCACTCCATGACTATATATGGTGCAA 120 consensus_4293#1 ------------------------------------------------------------ consensus_4293#0 GTACTGCTTCGCAACTGGTCAAGACTGGACCAAATTAACCGGCCTCGATGAAGGAATGAC 180 consensus_4293#1 ------------------------------------------------------------ consensus_4293#0 TCAAACCTCTATTAAAGGTGTCGGTTGCAACGATCAGAACAATTTTAACTTTCCGATTGA 240 consensus_4293#1 ------------------------------------------------------------ consensus_4293#0 TATTTCATGGAAATCCACAAACCCATTCGGTTGGCCTCAAATCGTTCTTCATGCTTATGG 300 consensus_4293#1 ------------------------------------------------------------ consensus_4293#0 CGTTGACGTCTTTGGCAAGGATGTTTTACGAGGTTATGGTGCCGTTCACGTCCCAATGAA 360 consensus_4293#1 ------------------------------------------------------------ consensus_4293#0 GATCGGAAGCCACAGAAAAAGAGTTTCCATGTTTGTGCCTCAATCTTCTTCACAACTAAT 420 consensus_4293#1 ------------------------------------------------------------ consensus_4293#0 GAAATTGAATGCATGGTTAACTGGAAAAAGACCAGAGTTTCTTAATCCAAAAGTAATAGC 480 consensus_4293#1 ------------------------------------------------------------ consensus_4293#0 TTGTGGTGAGGGTCGTGGAGTAACTAAAGTGCAAACCCAAGGCTTCGTAGATATCATATT 540 consensus_4293#1 ----------------------------------------GGCCTCGTAGATATCATATT 20 *** **************** consensus_4293#0 CAATATCGCTGTAAAAAATCTACAGAATTTAGGTTATGCTAATGACAAGAAAAGGGAGAC 600 consensus_4293#1 CAATANCGCTGNAAAAAATCTACAGGATTTAGGTTATGCTAATGACNAGAAAAGGGAGAC 80 ***** ***** ************* ******************** ************* consensus_4293#0 TNTAACAGAAGATTTATTGATGCTAATAAATAAAGATCCGATATAGAAATTATGGAAATG 660 consensus_4293#1 TTTAACAGGAGATTTATTGATGCTAATAAATAAAGAACCGATATAGNAATTATGGAAATG 140 * ****** *************************** ********* ************* consensus_4293#0 GTNTATTATTATTGGTATTATTAATACATAAGTTNCTCCCTTTTGNTAAGTGAACCCTGA 720 consensus_4293#1 NTTTATTATTANTGNTATTATTATTACATAAGTTTCTCCCTTTTGTTAAGTGAACCTGAT 200 * ******** ** ******** ********** ********** ********** consensus_4293#0 TAGATACTTGATAAATAATAA-TNATTTAGGT 751 consensus_4293#1 AAGATACTTGATAAATAATAAATTATTTAGTT 232 ******************** * ****** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||