These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4294#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [GATGGAAAAACTCTGGAAGATGCAGAAGCATTCACGTACCTGGGAAGTATCATTGATGAACAAGCAGGATCTGATGCAGATCTAAAGGCGAGGATTGGCAATGCAAGGGTAGCATTTCTACAATTGAAGAACATATGAAACTCAAAACAACTCCGTCATTTAATTTCAAAGTGAGAATCTTCAATACGAACGTCAAGACAGTCCTACTGTACGGAGCTGAAACGTTGAGAACTACTACATCCATCATCAGGAGGGTACAACTATTTAGTAAGAGTTGCTTTCATAAAACACTCAACTTTCACCGGCCGAATACCATCAGCAACAGCGTTTTATGGAAGAGGACAAACTAGCTTCCAGCTGAAGAGAAAATTAGGAAAAGACGTTGGAAGTGGATCGGACATACATAGGAGAAAATACTAGACTGCATCACGAGGCAATCCCTAACTTGGAATGGTGAAGGGAAGCGGAAAAGTGGAAGGCCAAAGAACACATTACGCCGAGAGATTGAAGCGGATATGAAAAGAATAAATAACAACTGGAAAGAAACTGGAAGGATTTCTCAGGACAGGGTTGA] [+] EMBL CD092848 [GATGGAAAAACTCTGGAAGATGCAGAAGCATTCACGTACCTGGGAAGTATCATTGATGAACAAGCAGGATCTGATGCAGATCTAAAGGCGAGGATTGGCAATGCAAGGGTAGCATTTCTACAATTGAAGAACATATGAAACTCAAAACAACTCCGTCATTTAATTTCAAAGTGAGAATCTTCAATACGAACGTCAAGACAGTCCTACTGTACGGAGCTGAAACGTTGAGAACTACTACATCCATCATCAGGAGGGTACAACTATTTAGTAAGAGTTGCTTTCATAAAACACTCAACTTTCACCGGCCGAATACCATCAGCAACAGCGTTTTATGGAAGAGGACAAACTAGCTTCCAGCTGAAGAGAAAATTAGGAAAAGACGTTGGAAGTGGATCGGACATACATAGGAGAAAATACTAGACTGCATCACGAGGCAATCCCTAACTTGGAATGGTGAAGGGAAGCGGAAAAGTGGAAGGCCAAAGAACACATTACGCCGAGAGATTGAAGCGGATATGAAAAGAATAAATAACAACTGGAAAGAAACTGGAAGGATTTCTCAGGACAGGGTTGA] consensusID : consensus_4294#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [TGTGTAAGCTTTGACGGTTGCTCCTTAGTCACTGTGGATTTAGATGACTTGAAACCAGCAATTTCATCATTATATAGCCTTTCTTTCTCCTTTTTTCTCTCTAATTGCTCCAGACGCTTTGAGTCTTTTTCTTCTTTCCGTTGCTGTTTTCTATTCAAATGCTTGTCATCATCTCTCCAATACTCATCCTCAGCCTTTTTTAGTGTGATTTCTCGCTCTTCTCGCTTCTTTTCGGCTCGTCTTTCTCGAGCCTCCAATGATTTCGGACATGTCCCGAGTTTCTTCGGCATATAGTGGATCCTTCAGCACAGTAATCTGGGAACACAAAAGGGAATGAGACCAGCTGTCTTTTATATTTGATTTATCAAGAAGTAATCAGATGAATATACATTGAGATCTGTTCGTGGTTAAATATCTAGTAATAATACAAGCTGACTACAGCTAAAAACAACTTAACCTGAATTTAACGTCAAGAATCAGAGTCGTAAACTG] [+] EMBL CD095361 [TGTGTAAGCTTTGACGGTTGCTCCTTAGTCACTGTGGATTTAGATGACTTGAAACCAGCAATTTCATCATTATATAGCCTTTCTTTCTCCTTTTTTCTCTCTAATTGCTCCAGACGCTTTGAGTCTTTTTCTTCTTTCCGTTGCTGTTTTCTATTCAAATGCTTGTCATCATCTCTCCAATACTCATCCTCAGCCTTTTTTAGTGTGATTTCTCGCTCTTCTCGCTTCTTTTCGGCTCGTCTTTCTCGAGCCTCCAATGATTTCGGACATGTCCCGAGTTTCTTCGGCATATAGTGGATCCTTCAGCACAGTAATCTGGGAACACAAAAGGGAATGAGACCAGCTGTCTTTTATATTTGATTTATCAAGAAGTAATCAGATGAATATACATTGAGATCTGTTCGTGGTTAAATATCTAGTAATAATACAAGCTGACTACAGCTAAAAACAACTTAACCTGAATTTAACGTCAAGAATCAGAGTCGTAAACTG] consensusID : consensus_4294#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [GCCAGAATTCGGCACGAGGGATATCTCAATGTATATTCATCTGATTACTTCTTGATAAATCAAATATAAAAGACAGCTGGTCTCATTCCCTTTTGTATTCCCAGATTACTAGGATCCACTATATGCCGAAGAAACTCGGGACATGTCCGAAATCATTGGAGGCTCGAGAAAGACGAGCCGAAAAGAAGCGAGAAGAGCGAGAAATCACACTAAAAAAGGCTGAGGATGAGTATTGGAGAGATGATGACAAGCATTTGAATAGAAACAGCAACGGGAAGAAGAAAAGACTC] [+] EMBL CD077449 [GCCAGAATTCGGCACGAGGGATATCTCAATGTATATTCATCTGATTACTTCTTGATAAATCAAATATAAAAGACAGCTGGTCTCATTCCCTTTTGTATTCCCAGATTACTAGGATCCACTATATGCCGAAGAAACTCGGGACATGTCCGAAATCATTGGAGGCTCGAGAAAGACGAGCCGAAAAGAAGCGAGAAGAGCGAGAAATCACACTAAAAAAGGCTGAGGATGAGTATTGGAGAGATGATGACAAGCATTTGAATAGAAACAGCAACGGGAAGAAGAAAAGACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4294#0 GATGGAAAAACTCTGGAAGATGCAGAAGCATTCACGTACCTGGGAAGTATCATTGATGAA 60 consensus_4294#2 ------------------------------------------------------------ consensus_4294#1 --------------------------------TGTGTAAGCTTTGACGGTTGCTCCTTAG 28 consensus_4294#0 CAAGCAGGATCTGATGCAGATCTAAAGGCGAGGATTGGCAATGCAAGGGTAGCATTTCTA 120 consensus_4294#2 --------------------------------------------------------GCCA 4 consensus_4294#1 TCACTGTGGATTTAGATGACTTGAAACCAGCAATTTCATCATTATATAGCCTTTCTTTCT 88 consensus_4294#0 CAATTGAAGAACATATGAAACTCAAAACAACTCCGTCATTTAATT-TCAAAGTGAGAATC 179 consensus_4294#2 GAATTCGGCACGAGGGATATCTCAATGTATATTCATCTGATTACT-TCTTGATAAATCAA 63 consensus_4294#1 CCTTTTTTCTCTCTAATTGCTCCAGACGCTTTGAGTCTTTTTCTTCTTTCCGTTGCTGTT 148 ** ** * ** * * * * consensus_4294#0 TTCAATACGAACGTCAAGACAGTCCTACTGTACGGAGCTGAAACGTTGAGAACTACTACA 239 consensus_4294#2 ATATAAAAGACAGCTGGTCTCATTCCCTTTTGTATTCCCAGATTACTAGGATCCACTATA 123 consensus_4294#1 TTCTATTCAAATGCT--TGTCATCAT-CTCTCCAATACTCA--TCCTCAGCCTTTTTTAG 203 * * * * * * * * * * * consensus_4294#0 TCCATCATCAGGAGGGTACAACTATTTAGTAAGAGTTGCTTTCATAAAACACTCAACTTT 299 consensus_4294#2 TGC----CGAAGAAACTCGGGACATGTCCGAAA--------TCATTGGAGGCTCGAGAAA 171 consensus_4294#1 TGTGATTTCTCGCTCTTCTCGCTTCTTTTCGGC--TCGTCTTTCTCGAGCCTCCAATGAT 261 * * * * * * * * consensus_4294#0 CACCGGCCGAATACCATCAGCAACAGCGTTTTATGGAAG--AGGACAAACTAGCTTCCAG 357 consensus_4294#2 GACGAGCCGAAAAGAAGCGAGAAGAGCGAGAAATCACAC--TAAAAAAGGCTGAGGATGA 229 consensus_4294#1 TTCGGACATGTCCCGAGTTTCTTCGGCATATAGTGGATCCTTCAGCACAGTAATCTGGGA 321 * * * ** * * consensus_4294#0 CTGAAGAGAAAATTAGGAAAAGACGTTGGAAGTGGATCGGACATACATAGGAGAAAATAC 417 consensus_4294#2 GTATTGGAGAGATGATGACAAG-CATTTGAATAGAAACAGCAACGGGAAGAAGAAAAGAC 288 consensus_4294#1 ACACAAAAGGGAATGAGACCAGCTGTCT--TTTATATTTGATTTATCAAGAAGTAATCAG 379 * ** ** * * * ** ** ** * consensus_4294#0 TAGACTGCATCACGAGGCAATCCCTAACTTGGAATGGTGAAGGGAAGCGGAAAAGTGGAA 477 consensus_4294#2 TC---------------------------------------------------------- 290 consensus_4294#1 ATGAATATACATTGAGATCTGTTCGTGGTTA-AATATCTAGTAATAATACAAGCTGACTA 438 consensus_4294#0 GGCCAAAGAACACATTACGCCGAGAGATTGAAGCGGATATGAAAAGAATAAATAACAACT 537 consensus_4294#2 ------------------------------------------------------------ consensus_4294#1 CAGCTAAAAACAACTTA-ACCTGAATTTAACGTCAAGAATCAGAGTCGTAAACTG----- 492 consensus_4294#0 GGAAAGAAACTGGAAGGATTTCTCAGGACAGGGTTGA 574 consensus_4294#2 ------------------------------------- consensus_4294#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||