These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_43#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [TTTTATAGATCATATATTTGGGATATTAGGGTGAGGATCAGTAAGTAACGTGCAATGATACTGTGTAACCCATGAAACTGTCACTAGACTGAATTATCAAACCAACCCCGGGAATTACTTTATTTTAAGAGGCAAACCCCACTCCCCCACATTTTTTNNTCTTTTTTATGGGCCAACAAATTCGATTTGTCACTTCATCCTGATGGCCACTTTCAACAAATTGAATTCGACCAAATTTCAGACTTTATCAAGCGTGTTGAGAAGCAGTTAGTTGTAAATGATGGTGATGCGCTGCATAGGTTCTGTAAAAGCTTTTCAGATAATATGAATTCAAGGGGTTCTAATCATAAACTTCGTGTACTTTCTNNNNNNTGATATTCAGATCCCGAACTAGTTGCAGATCTATGTCTTGCAGAGTATTTCCTTTACAGTCAAATTGCTGAATATGTATCATTTCATGGTAAGAGCATCCCATGGTTTGTGTCAAATGTCACCCGCCAAGATTTTATTTGCCTACTAAATATG] [+] EMBL CD155278 [TTTTATAGATCATATATTTGGGATATTAGGGTGAGGATCAGTAAGTAACGTGCAATGATACTGTGTAACCCATGAAACTGTCACTAGACTGAATTATCAAACCAACCCCGGGAATTACTTTATTTTAAGAGGCAAACCCCACTCCCCCACATTTTTTNNTCTTTTTTATGGGCCAACAAATTCGATTTGTCACTTCATCCTGATGGCCACTTTCAACAAATTGAATTCGACCAAATTTCAGACTTTATCAAGCGTGTTGAGAAGCAGTTAGTTGTAAATGATGGTGATGCGCTGCATAGGTTCTGTAAAAGCTTTTCAGATAATATGAATTCAAGGGGTTCTAATCATAAACTTCGTGTACTTTCTNNNNNNTGATATTCAGATCCCGAACTAGTTGCAGATCTATGTCTTGCAGAGTATTTCCTTTACAGTCAAATTGCTGAATATGTATCATTTCATGGTAAGAGCATCCCATGGTTTGTGTCAAATGTCACCCGCCAAGATTTTATTTGCCTACTAAATATG] consensusID : consensus_43#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence [GCTGGTATGATCTTCCGTGGCTATTCGCTGAATGCTATCTCTACCGTCGTATTATCGATGTGGTTGTACAAAGGCTTCTTTATGGGCCAACGAATTCGATTCGTCACTTCATCCTGATGGCGACTTTCAACAAATTGAATTCGACCAAATTTCAGACTTTATCAAGCGTGTGGAAAAGCAGTTAGTGGGGGGGTGGTATGTAAATTTGT] [+] EMBL CD192706 [GCTGGTATGATCTTCCGTGGCTATTCGCTGAATGCTATCTCTACCGTCGTATTATCGATGTGGTTGTACAAAGGCTTCTTTATGGGCCAACGAATTCGATTCGTCACTTCATCCTGATGGCGACTTTCAACAAATTGAATTCGACCAAATTTCAGACTTTATCAAGCGTGTGGAAAAGCAGTTAGTGGGGGGGTGGTATGTAAATTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_43#0 TTTTATAGATCATATATTTGGGATATTAGGGTGAGGATCAGTAAGTAACGTGCAATGATA 60 consensus_43#1 ------------------------------------------------------------ consensus_43#0 CTGTGTAACCCATGAAACTGTCACTAGACTGAATTATCAAACCAACCCCGGGAATTACTT 120 consensus_43#1 ----------------------GCTGGTATGATCTTCCGTGGCTATTCGCTGAAT-GCTA 37 ** * *** * * * * * **** ** consensus_43#0 TATTTTAAGAGGCAAACCCCACTCCCCCACATTTTTTNNTCTTTTTTATGGGCCAACAAA 180 consensus_43#1 TCTCTACCGTCGTATTATCGATGTGGTTGTAC---AAAGGCTTCTTTATGGGCCAACGAA 94 * * * * * * * * * *** ************* ** consensus_43#0 TTCGATTTGTCACTTCATCCTGATGGCCACTTTCAACAAATTGAATTCGACCAAATTTCA 240 consensus_43#1 TTCGATTCGTCACTTCATCCTGATGGCGACTTTCAACAAATTGAATTCGACCAAATTTCA 154 ******* ******************* ******************************** consensus_43#0 GACTTTATCAAGCGTGTTGAGAAGCAGTTAGTTGTAAATGATGGTGATGCGCTGCATAGG 300 consensus_43#1 GACTTTATCAAGCGTGTGGAAAAGCAGTTAGTGG-----GGGGGTGGTATG-TAAATTTG 208 ***************** ** *********** * * **** * * * ** * consensus_43#0 TTCTGTAAAAGCTTTTCAGATAATATGAATTCAAGGGGTTCTAATCATAAACTTCGTGTA 360 consensus_43#1 T----------------------------------------------------------- 209 * consensus_43#0 CTTTCTNNNNNNTGATATTCAGATCCCGAACTAGTTGCAGATCTATGTCTTGCAGAGTAT 420 consensus_43#1 ------------------------------------------------------------ consensus_43#0 TTCCTTTACAGTCAAATTGCTGAATATGTATCATTTCATGGTAAGAGCATCCCATGGTTT 480 consensus_43#1 ------------------------------------------------------------ consensus_43#0 GTGTCAAATGTCACCCGCCAAGATTTTATTTGCCTACTAAATATG 525 consensus_43#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||