cluster # 43

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Schistosoma mansoni
cluster # 43 cluster # 43 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_43#0 length = 525 sequences # 1

consensus_43#1 length = 209 sequences # 1

consensusID : consensus_43#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [TTTTATAGATCATATATTTGGGATATTAGGGTGAGGATCAGTAAGTAACGTGCAATGATACTGTGTAACCCATGAAACTGTCACTAGACTGAATTATCAAACCAACCCCGGGAATTACTTTATTTTAAGAGGCAAACCCCACTCCCCCACATTTTTTNNTCTTTTTTATGGGCCAACAAATTCGATTTGTCACTTCATCCTGATGGCCACTTTCAACAAATTGAATTCGACCAAATTTCAGACTTTATCAAGCGTGTTGAGAAGCAGTTAGTTGTAAATGATGGTGATGCGCTGCATAGGTTCTGTAAAAGCTTTTCAGATAATATGAATTCAAGGGGTTCTAATCATAAACTTCGTGTACTTTCTNNNNNNTGATATTCAGATCCCGAACTAGTTGCAGATCTATGTCTTGCAGAGTATTTCCTTTACAGTCAAATTGCTGAATATGTATCATTTCATGGTAAGAGCATCCCATGGTTTGTGTCAAATGTCACCCGCCAAGATTTTATTTGCCTACTAAATATG]

[+] EMBL CD155278             [TTTTATAGATCATATATTTGGGATATTAGGGTGAGGATCAGTAAGTAACGTGCAATGATACTGTGTAACCCATGAAACTGTCACTAGACTGAATTATCAAACCAACCCCGGGAATTACTTTATTTTAAGAGGCAAACCCCACTCCCCCACATTTTTTNNTCTTTTTTATGGGCCAACAAATTCGATTTGTCACTTCATCCTGATGGCCACTTTCAACAAATTGAATTCGACCAAATTTCAGACTTTATCAAGCGTGTTGAGAAGCAGTTAGTTGTAAATGATGGTGATGCGCTGCATAGGTTCTGTAAAAGCTTTTCAGATAATATGAATTCAAGGGGTTCTAATCATAAACTTCGTGTACTTTCTNNNNNNTGATATTCAGATCCCGAACTAGTTGCAGATCTATGTCTTGCAGAGTATTTCCTTTACAGTCAAATTGCTGAATATGTATCATTTCATGGTAAGAGCATCCCATGGTTTGTGTCAAATGTCACCCGCCAAGATTTTATTTGCCTACTAAATATG]




>consensus_43#0
TTTTATAGATCATATATTTGGGATATTAGGGTGAGGATCAGTAAGTAACGTGCAATGATA
CTGTGTAACCCATGAAACTGTCACTAGACTGAATTATCAAACCAACCCCGGGAATTACTT
TATTTTAAGAGGCAAACCCCACTCCCCCACATTTTTTNNTCTTTTTTATGGGCCAACAAA
TTCGATTTGTCACTTCATCCTGATGGCCACTTTCAACAAATTGAATTCGACCAAATTTCA
GACTTTATCAAGCGTGTTGAGAAGCAGTTAGTTGTAAATGATGGTGATGCGCTGCATAGG
TTCTGTAAAAGCTTTTCAGATAATATGAATTCAAGGGGTTCTAATCATAAACTTCGTGTA
CTTTCTNNNNNNTGATATTCAGATCCCGAACTAGTTGCAGATCTATGTCTTGCAGAGTAT
TTCCTTTACAGTCAAATTGCTGAATATGTATCATTTCATGGTAAGAGCATCCCATGGTTT
GTGTCAAATGTCACCCGCCAAGATTTTATTTGCCTACTAAATATG

consensusID : consensus_43#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [GCTGGTATGATCTTCCGTGGCTATTCGCTGAATGCTATCTCTACCGTCGTATTATCGATGTGGTTGTACAAAGGCTTCTTTATGGGCCAACGAATTCGATTCGTCACTTCATCCTGATGGCGACTTTCAACAAATTGAATTCGACCAAATTTCAGACTTTATCAAGCGTGTGGAAAAGCAGTTAGTGGGGGGGTGGTATGTAAATTTGT]

[+] EMBL CD192706             [GCTGGTATGATCTTCCGTGGCTATTCGCTGAATGCTATCTCTACCGTCGTATTATCGATGTGGTTGTACAAAGGCTTCTTTATGGGCCAACGAATTCGATTCGTCACTTCATCCTGATGGCGACTTTCAACAAATTGAATTCGACCAAATTTCAGACTTTATCAAGCGTGTGGAAAAGCAGTTAGTGGGGGGGTGGTATGTAAATTTGT]




>consensus_43#1
GCTGGTATGATCTTCCGTGGCTATTCGCTGAATGCTATCTCTACCGTCGTATTATCGATG
TGGTTGTACAAAGGCTTCTTTATGGGCCAACGAATTCGATTCGTCACTTCATCCTGATGG
CGACTTTCAACAAATTGAATTCGACCAAATTTCAGACTTTATCAAGCGTGTGGAAAAGCA
GTTAGTGGGGGGGTGGTATGTAAATTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_43#0      TTTTATAGATCATATATTTGGGATATTAGGGTGAGGATCAGTAAGTAACGTGCAATGATA 60
consensus_43#1      ------------------------------------------------------------
                                                                                

consensus_43#0      CTGTGTAACCCATGAAACTGTCACTAGACTGAATTATCAAACCAACCCCGGGAATTACTT 120
consensus_43#1      ----------------------GCTGGTATGATCTTCCGTGGCTATTCGCTGAAT-GCTA 37
                                           ** *  ***  *  *    * *  *   ****  ** 

consensus_43#0      TATTTTAAGAGGCAAACCCCACTCCCCCACATTTTTTNNTCTTTTTTATGGGCCAACAAA 180
consensus_43#1      TCTCTACCGTCGTATTATCGATGTGGTTGTAC---AAAGGCTTCTTTATGGGCCAACGAA 94
                    * * *   *  * *    * *         *         *** ************* **

consensus_43#0      TTCGATTTGTCACTTCATCCTGATGGCCACTTTCAACAAATTGAATTCGACCAAATTTCA 240
consensus_43#1      TTCGATTCGTCACTTCATCCTGATGGCGACTTTCAACAAATTGAATTCGACCAAATTTCA 154
                    ******* ******************* ********************************

consensus_43#0      GACTTTATCAAGCGTGTTGAGAAGCAGTTAGTTGTAAATGATGGTGATGCGCTGCATAGG 300
consensus_43#1      GACTTTATCAAGCGTGTGGAAAAGCAGTTAGTGG-----GGGGGTGGTATG-TAAATTTG 208
                    ***************** ** *********** *     *  **** *  * *  **  *

consensus_43#0      TTCTGTAAAAGCTTTTCAGATAATATGAATTCAAGGGGTTCTAATCATAAACTTCGTGTA 360
consensus_43#1      T----------------------------------------------------------- 209
                    *                                                           

consensus_43#0      CTTTCTNNNNNNTGATATTCAGATCCCGAACTAGTTGCAGATCTATGTCTTGCAGAGTAT 420
consensus_43#1      ------------------------------------------------------------
                                                                                

consensus_43#0      TTCCTTTACAGTCAAATTGCTGAATATGTATCATTTCATGGTAAGAGCATCCCATGGTTT 480
consensus_43#1      ------------------------------------------------------------
                                                                                

consensus_43#0      GTGTCAAATGTCACCCGCCAAGATTTTATTTGCCTACTAAATATG 525
consensus_43#1      ---------------------------------------------