|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[TACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGTTAATCCGTCTATATCACATCATTCTGTTCGATTGTTTCGTACATTCCCAGTAGTTAATAGTTCTATACGTAGGCGTGTGGGGCGTATCAATTTAAAATCAGGAGCTACGGAGTTTGGACATTCCCTCAATCTCAATAAAACTCGAGCCTTAGTGGGTGGCGCAGCTGCAA]
[+] EMBL CD123206 [TACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGTTAATCCGTCTATATCACATCATTCTGTTCGATTGTTTCGTACATTCCCAGTAGTTAATAGTTCTATACGTAGGCGTGTGGGGCGTATCAATTTAAAATCAGGAGCTACGGAGTTTGGACATTCCCTCAATCTCAATAAAACTCGAGCCTTAGTGGGTGGCGCAGCTGCAA]
consensusID : consensus_4324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 287 fasta sequence
[TAAAGGTTGTCTTAGTAGAATAGTTAATCCAGCACAAAAATTAGAAACATGAGTCGTAATGGTGAGTGTAGGTGAACAATCTCAATATCACAGATCTATTGACTTGTTCTCATCCATAAAGAGCCTGATACAAACAAAATGTTCTGCCCCACAAACACGGGTGGATTGAAATCATCGCCCTCACCATCAGTGCTTGCTGGTCAGTAACTCCACTTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCA]
[+] EMBL CD188458 [TAAAGGTTGTCTTAGTAGAATAGTTAATCCAGCACAAAAATTAGAAACATGAGTCGTAATGGTGAGTGTAGGTGAACAATCTCAATATCACAGATCTATTGACTTGTTCTCATCCATAAAGAGCCTGATACAAACAAAATGTTCTGCCCCACAAACACGGGTGGATTGAAATCATCGCCCTCACCATCAGTGCTTGCTGGTCAGTAACTCCACTTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCA]
[+] EMBL CD188489 [TAAAGGTTGTCTTAGTAGAATAGTTAATCCAGCACAAAAATTAGAAACATGAGTCGTAATGGTGAGTGTAGGTGAACAATCTCAATATCACAGATCTATTGACTTGTTCTCATCCATAAAGAGCCTGATACAAACAAAATGTTCTGCCCCACAAACACGGGTGGATTGAAATCATCGCCCTCACCATCAGTGCTTGCTGGTCAGTAACTCCACTTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4324#0 TACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCA 60
consensus_4324#1 ------------------------------------------------------------
consensus_4324#0 TCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGC 120
consensus_4324#1 ------------------------------------------------------------
consensus_4324#0 CGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTC-CAATTCAAA 179
consensus_4324#1 --TAAAGGTTGTCTTAGTAGAATAGTTAATCCAGCACAAAAATTAGAAACATGAGTCGTA 58
* * * * * ** ** *** * * * ** * * * ** *
consensus_4324#0 AATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTC-T 238
consensus_4324#1 ATGGTGAGTGTAGGTGAACAA-TCTCAATATCAC-AGATCTATTGAC---TTGTTCTCAT 113
* * * *** **** *** ** * * ** ** ** **** *
consensus_4324#0 CCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGT 298
consensus_4324#1 CCATAAAGAGCCTGATACAAACAAAAT--GTTCTG---CCCCACAAACA--CGGGTGGAT 166
**** * * * ** * * * * *** * * *** ** * *
consensus_4324#0 CGCCGCCACCGCCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCA 358
consensus_4324#1 TGAAATCATCGCCCTCACCATCAG--------TGCTTGCTGGTCAGTA-ACTCCACTTCA 217
* ** **** * *** * * * ** ******* ****** ****
consensus_4324#0 AAAATACACTCGCTCGCTCACATCTCTCGTTAATCCGTCTATATCACATCATTCTGTTCG 418
consensus_4324#1 AAAATACACTCGCTCGCTCACATCTCTCG---ATACAACTACACCTCTTCAC---AGTCC 271
***************************** ** * *** * * * *** **
consensus_4324#0 ATTGTTTCGTACATTCCCAGTAGTTAATAGTTCTATACGTAGGCGTGTGGGGCGTATCAA 478
consensus_4324#1 ACTCTCTC---CATCGCCA----------------------------------------- 287
* * * ** *** ***
consensus_4324#0 TTTAAAATCAGGAGCTACGGAGTTTGGACATTCCCTCAATCTCAATAAAACTCGAGCCTT 538
consensus_4324#1 ------------------------------------------------------------
consensus_4324#0 AGTGGGTGGCGCAGCTGCAA 558
consensus_4324#1 --------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||