These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 581 fasta sequence [TTTCTTGGGCACTTAACTATGACTGATTTTGCAGCCTCCCATAAAACTGATCTTTATCGTCGTCGTTGTTATCATTCGTGGGTACATAACATTGGATAACATTCATTGTGACACCCTCCTTTTTTGTTTTGAACGATGCTTTGATAGTTCTGGATCCATGAGATTTCCATCCTACAAGTGCATTTCGTGTTTCTCTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGAGCATTTTCCTCTTCGTGACCAGAGTACAACAGCATCTCTCGCGTATCTGGCCTTTGCTGTCCACCTTGAGTCCAATGGGTTTCGCTGATTCCAAGTATGCCAATTTGTATCTCCTCATTTCCGTTGCTATTCGATAGGTCTTCCCGGTCTCCCACATTGTGTGGACGTTCCATATACCTATAAAAAATGTTGCTCTGGTTGTTAGAAGGAGCATCGGCCTCGTGACTTCCGAAGAATCTCGGCTTTCATCGTGAGGCGTCATAATTCTTCCTTCAACTTGGAGGGCAGAGTTAAAATTATTTCTTCTGGTTAGCGTTTTTTAGCGAGTTAGTTTTTCTACGGGATGGGGTC] [+] EMBL CD179425 [TTTCTTGGGCACTTAACTATGACTGATTTTGCAGCCTCCCATAAAACTGATCTTTATCGTCGTCGTTGTTATCATTCGTGGGTACATAACATTGGATAACATTCATTGTGACACCCTCCTTTTTTGTTTTGAACGATGCTTTGATAGTTCTGGATCCATGAGATTTCCATCCTACAAGTGCATTTCGTGTTTCTCTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGAGCATTTTCCTCTTCGTGACCAGAGTACAACAGCATCTCTCGCGTATCTGGCCTTTGCTGTCCACCTTGAGTCCAATGGGTTTCGCTGATTCCAAGTATGCCAATTTGTATCTCCTCATTTCCGTTGCTA ] [-] EMBL CD131245 [ ATGCTTTGATAGTTCTGGATCCATGAGATTTCCATCCTACAAGTGCATTTCGTGTTTCTCTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGAGCATTTTCCTCTTCGTGACCAGAGTACAACAGCATCTCTCGCGTATCTGGCCTTTGCTGTCCACCTTGAGTCCAATGGGTTTCGCTGATTCCAAGTATGCCAATTTGTATCTCCTCATTTCCGTTGCCATTCGATAGGTCTTCCCGGTCTCCCACATTGTGTGGACGTTCCATATACCTATAAAAAATGTTGCTCTGGTTGTTAGAAGGAGCATCGGCCTCGTGACTTCCGAAGAATCTCGGCTTTCATCGTGAGGCGTCATAATTCTTCCTTCAACTTGGAGGGCAGAGTTAAAATTATTTCTTCTGGTTAGCGTTTTTTAGCGAGTTAGTTTTTCTACGGGATGGGGTC] consensusID : consensus_4326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [TGTAATCCCTTGCTTCTTTGTTCTGAAAGATGCTTTGATTATCCTGGGTCCATGAGATTCCCATCCTACAAGTGCATTTCGTGCTTCTTTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGGGCATTTTCCCCTTCGTGACCGGAGTACAGCAGCATCTCTCCTGTGTCTAGCCTTTGTTGTCCAGTTTGTGTCAATGGGTTTCGCTGATCCAGAGTACTGAAAGTTGTTACATGCTCTTTGATGTGTGGGTGAGAATGATAATGATTGGTTGTTTTGCTGAGTCAGACATTAGATAGGGTGACAGGTGTTATATGCGTTATATATCCCCCTATCCTTCTTCTTATTATTATTATGGACTAACTGTTCTTTGTTGTTGGATTGTGTCGGACTTTGGTGTGGAAATATTTTGACGTTATAGTTATAGCCTGTAGCTCTTCTGGAGTTACTGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCCCATCCCGTAGAAAAGCTAACTCGCTAAAAAAACGCTACCCAGAAAAAAAATTC] [+] EMBL CD093126 [TGTAATCCCTTGCTTCTTTGTTCTGAAAGATGCTTTGATTATCCTGGGTCCATGAGATTCCCATCCTACAAGTGCATTTCGTGCTTCTTTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGGGCATTTTCCCCTTCGTGACCGGAGTACAGCAGCATCTCTCCTGTGTCTAGCCTTTGTTGTCCAGTTTGTGTCAATGGGTTTCGCTGATCCAGAGTACTGAAAGTTGTTACATGCTCTTTGATGTGTGGGTGAGAATGATAATGATTGGTTGTTTTGCTGAGTCAGACATTAGATAGGGTGACAGGTGTTATATGCGTTATATATCCCCCTATCCTTCTTCTTATTATTATTATGGACTAACTGTTCTTTGTTGTTGGATTGTGTCGGACTTTGGTGTGGAAATATTTTGACGTTATAGTTATAGCCTGTAGCTCTTCTGGAGTTACTGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGGGCATGGGGTTAGCGACCCCATCCCGTAGAAAAGCTAACTCGCTAAAAAAACGCTACCCAGAAAAAAAATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4326#0 TTTCTTGGGCACTTAACTATGACTGATTTTGCAGCCTCCCATAAAACTGATCTTTATCGT 60 consensus_4326#1 ------------------------------------------------------------ consensus_4326#0 CGTCGTTGTTATCATTCGTGGGTACATAACATTGGATAACATTCATTGTGACACCCTCCT 120 consensus_4326#1 ----------------------------------------------TGTAATCCCTTGCT 14 *** * ** * ** consensus_4326#0 TTTTTGTTTTGAACGATGCTTTGATAGTTCTGGATCCATGAGATTTCCATCCTACAAGTG 180 consensus_4326#1 TCTTTGTTCTGAAAGATGCTTTGATTATCCTGGGTCCATGAGATTCCCATCCTACAAGTG 74 * ****** **** *********** * **** *********** ************** consensus_4326#0 CATTTCGTGTTTCTCTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGAGCATTTTCCT 240 consensus_4326#1 CATTTCGTGCTTCTTTGGACAGCATTAGAGCAACTCCCTGAGTGTGTGGGGCATTTTCCC 134 ********* **** ********************************** ********* consensus_4326#0 CTTCGTGACCAGAGTACAACAGCATCTCTCGCGTATCTGGCCTTTGCTGTCCACCTTGAG 300 consensus_4326#1 CTTCGTGACCGGAGTACAGCAGCATCTCTCCTGTGTCTAGCCTTTGTTGTCCAGTTTGTG 194 ********** ******* *********** ** *** ******* ****** *** * consensus_4326#0 TCCAATGGGTTTCGCTGATTCCAAGTATGCCAATTTGT-ATCTCCTCATTTCCGT----- 354 consensus_4326#1 TC-AATGGGTTTCGCTGATCCAGAGTACTGAAAGTTGTTACATGCTCTTTGATGTGTGGG 253 ** **************** * **** ** **** * * *** ** ** consensus_4326#0 ------TGCTATTCGATAGGTCTTCC-CGGTCTCCCACATTGTGTGG------ACGTTCC 401 consensus_4326#1 TGAGAATGATAATGATTGGTTGTTTTGCTGAGTCAGACATTAGATAGGGTGACAGGTGTT 313 ** ** * * * * ** * * ** ***** * * * ** consensus_4326#0 ATATAC-CTATAAAAAATGTTGCTCTGGTTGTTAGAAGGAGCATCGGCC------TCGTG 454 consensus_4326#1 ATATGCGTTATATATCCCCCTATCCTTCTTCTTATTATTATTATGGACTAACTGTTCTTT 373 **** * **** * * ** ** *** * * ** * * ** * consensus_4326#0 ACTTCCGAAGAATCTCGGCTTTCATCGTG-AGGCGTCATAATTCTTCCTTCAACTTGGAG 513 consensus_4326#1 GTTGTTGGATTGTGTCGGACTTTGGTGTGGAAATATTTTGACGTTATAGTTATAGCCTGT 433 * * * * **** ** *** * * * * * * * consensus_4326#0 GGCAGAGTTAAAATTATTTCTTCTGGTTAGCGTTTTTTAGCGAGTTAGTTTTTCTACGGG 573 consensus_4326#1 AGCTCTTCTGGAGTTACTGCCGGTCCCAAGCCCGGGTAAAGGAGGAGGGTTGGGCATGGG 493 ** * * *** * * * *** * * *** * ** * *** consensus_4326#0 AT--GGGGTC-------------------------------------------------- 581 consensus_4326#1 GTTAGCGACCCCATCCCGTAGAAAAGCTAACTCGCTAAAAAAACGCTACCCAGAAAAAAA 553 * * * * consensus_4326#0 ---- consensus_4326#1 ATTC 557 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||