cluster # 4330

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Schistosoma mansoni
cluster # 4330 cluster # 4330 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4330#0 length = 249 sequences # 2

consensus_4330#1 length = 210 sequences # 1

consensusID : consensus_4330#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 249
fasta sequence

                              [GTGTATTTATCACAAATAATGGGAACTACAAATTGAGTGATGTTGTGAGTGTAGCACAAGTTGATGTCAGGTGCCTGTTACTTCTCTTCGATGGACACTCGTCCCTTCTGCTTAGAACCCTTTATAAGTCCAGGTTTGTTCGTGAACTTCTTAACAATATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCCATACCCGGACCCGCGACAACTGGATTCTGACATTCGAACGATACGACAAGTACA]

[+] EMBL CD146050             [GTGTATTTATCACAAATAATGGGAACTACAAATTGAGTGATGTTGTGAGTGTAGCACAAGTTGATGTCAGGTGCCTGTTACTTCTCTTCGATGGACACTCGTCCCTTCTGCTTAGAACCCTTTATAAGTCCAGGTTTGTTCGTGAACTTCTTAACAATATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCCATA                                                   ]
[+] EMBL CD146066             [       TATCACAAATAATGGGAACTACAAATTGAGTGATGTTGTGAGTGTAGCACAAGTTGATGTCAGATGCCTGTTACTTCTCTTCGATGGACACTCGTCCCTTCTGCTTAGAACCCTTTATAAGTCCAGGTTTGTTCGTGAACTTCTTAACAATATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCCATACCCGGACCCGCGACAACTGGATTCTGACATTCGAACGATACGACAAGTACA]




>consensus_4330#0
GTGTATTTATCACAAATAATGGGAACTACAAATTGAGTGATGTTGTGAGTGTAGCACAAG
TTGATGTCAGGTGCCTGTTACTTCTCTTCGATGGACACTCGTCCCTTCTGCTTAGAACCC
TTTATAAGTCCAGGTTTGTTCGTGAACTTCTTAACAATATTGCCAATCCAGGAGAATACG
TTATTGGCGATTTCCATACCCGGACCCGCGACAACTGGATTCTGACATTCGAACGATACG
ACAAGTACA

consensusID : consensus_4330#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence

                              [TCGATGACACTCGTCCTCTGCTAGAACCTTATAAGTCAGTTGTTCGTAACTCTTAACAATATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCATACCCGCACCCGCGACAACTGGATTCTGACATTCGAACGATACGACGAAGTACAACCATGATGAGAGTTAGGAATTGGCATTGTAGTGGTTTGCTGTTGAAGTGAATGTTTCT]

[-] EMBL SMAA14125            [TCGATGACACTCGTCCTCTGCTAGAACCTTATAAGTCAGTTGTTCGTAACTCTTAACAATATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCATACCCGCACCCGCGACAACTGGATTCTGACATTCGAACGATACGACGAAGTACAACCATGATGAGAGTTAGGAATTGGCATTGTAGTGGTTTGCTGTTGAAGTGAATGTTTCT]




>consensus_4330#1
TCGATGACACTCGTCCTCTGCTAGAACCTTATAAGTCAGTTGTTCGTAACTCTTAACAAT
ATTGCCAATCCAGGAGAATACGTTATTGGCGATTTCATACCCGCACCCGCGACAACTGGA
TTCTGACATTCGAACGATACGACGAAGTACAACCATGATGAGAGTTAGGAATTGGCATTG
TAGTGGTTTGCTGTTGAAGTGAATGTTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4330#0      GTGTATTTATCACAAATAATGGGAACTACAAATTGAGTGATGTTGTGAGTGTAGCACAAG 60
consensus_4330#1      ------------------------------------------------------------
                                                                                  

consensus_4330#0      TTGATGTCAGGTGCCTGTTACTTCTCTTCGATGGACACTCGTCCCTTCTGCTTAGAACCC 120
consensus_4330#1      ---------------------------TCGATG-ACACTCGTCC--TCTGCT-AGAACC- 28
                                                 ****** **********  ****** ****** 

consensus_4330#0      TTTATAAGTCCAGGTTTGTTCGTGAACTTCTTAACAATATTGCCAATCCAGGAGAATACG 180
consensus_4330#1      -TTATAAGTCAG---TTGTTCGTAA--CTCTTAACAATATTGCCAATCCAGGAGAATACG 82
                       *********     ******** *   ********************************

consensus_4330#0      TTATTGGCGATTTCCATACCCGGACCCGCGACAACTGGATTCTGACATTCGAACGATACG 240
consensus_4330#1      TTATTGGCGATTTC-ATACCCGCACCCGCGACAACTGGATTCTGACATTCGAACGATACG 141
                      ************** ******* *************************************

consensus_4330#0      AC-AAGTACA-------------------------------------------------- 249
consensus_4330#1      ACGAAGTACAACCATGATGAGAGTTAGGAATTGGCATTGTAGTGGTTTGCTGTTGAAGTG 201
                      ** *******                                                  

consensus_4330#0      ---------
consensus_4330#1      AATGTTTCT 210