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Schistosoma mansoni
cluster # 4336 cluster # 4336       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4336#0 length = 1371 sequences # 2  
consensus_4336#1 length = 492 sequences # 1  

consensusID : consensus_4336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1371
fasta sequence
                              [TCTCAAGCAGGCTATGTCAACTCCAATTTCTAGTCTGAACAGTTTATTTTCATTCACATCTCCTGCTGTGAAAAGACTTCTTGGTTGGAAACAAGGAGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGATTCACTTGTAAAAAAACTTAAAAAGAAAAAGGGTGCACTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGACATAGTGAATACCCTAGTCTTAGTACTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATCTAATCTAGGAATGTTCCCGATGACAGACTCAGCAATGCCCTACAATGTAAATTATCCACACAACTTCAGTCATTCTCCGTCTCTTCCTCCCGGAAACAGTGGAACTTCTACAGACAGCACAGTTGCTGGACCTATCCATTCACTTAATAGCTCAAACCTTCAATCTGGTTACCAAACTCAACCCAATCAAGATCCGGCCTCCTCTGGACAAACTATGCATCCAGTCAATTATCAAGAACCTAAATACTGGTGTTCCATTGTTTATTATGAACTAAATAATCGTGTCGGTGAAGCATTTAACGCTTCACAATTAAGCATAATCATTGATGGTTTTACAGATCCATCAAATAATTCAGATCGTTTTTGTCTTGGCCTTTTGTCGAATGTCAACCGAAACTCTACAATCGAGAATACAAGACGTCATATTGGAAAAGGTGTTCATCTTTATTATGTTGGTGGCGAAGTATACGCTGAATGTTTATCGGATAGTAGTATATTTGTACAATCACGTAATTGTAATTATCATCATAATTTTCATCCAACCACAGTGTGTAAAATTCCACCTGGTTGTTCATTGAAAATATTCTCAAATCAAGAATTTGCTCACCTACTTAGTCGTACAGTACATCATGGTTTTGAAGCTGTTTATGAATTAACTAAAATGTGTACAATACGTATGAGTTTTGTAAAAGGTTGGGGTGCTGAATATCATCGACAAGATGTTACATCTACTCCATGTTGGGTTGAAATCCATTTGAATGGTCCATTACAATGGCTTGATCGTGTACTTACACAAATGGGTACACCAAGAAATCCGATTTCATC]

[+] EMBL AF215933             [TCTCAAGCAGGCTATGTCAACTCCAATTTCTAGTCTGAACAGTTTATTTTCATTCACATCTCCTGCTGTGAAAAGACTTCTTGGTTGGAAACAAGGAGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGATTCACTTGTAAAAAAACTTAAAAAGAAAAAGGGTGCACTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGACATAGTGAATACCCTAGTCTTAGTACTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATCTAATCTAGGAATGTTCCCGATGACAGACTCAGCAATGCCCTACAATGTAAATTATCCACACAACTTCAGTCATTCTCCGTCTCTTCCTCCCGGAAACAGTGGAACTTCTACAGACAGCACAGTTGCTGGACCTATCCATTCACTTAATAGCTCAAACCTTCAATCTGGTTACCAAACTCAACCCAATCAAGATCCGGCCTCCTCTGGACAAACTATGCATCCAGTCAATTATCAAGAACCTAAATACTGGTGTTCCATTGTTTATTATGAACTAAATAATCGTGTCGGTGAAGCATTTAACGCTTCACAATTAAGCATAATCATTGATGGTTTTACAGATCCATCAAATAATTCAGATCGTTTTTGTCTTGGCCTTTTGTCGAATGTCAACCGAAACTCTACAATCGAGAATACAAGACGTCATATTGGAAAAGGTGTTCATCTTTATTATGTTGGTGGCGAAGTATACGCTGAATGTTTATCGGATAGTAGTATATTTGTACAATCACGTAATTGTAATTATCATCATAATTTTCATCCAACCACAGTGTGTAAAATTCCACCTGGTTGTTCATTGAAAATATTCTCAAATCAAGAATTTGCTCACCTACTTAGTCGTACAGTACATCATGGTTTTGAAGCTGTTTATGAATTAACTAAAATGTGTACAATACGTATGAGTTTTGTAAAAGGTTGGGGTGCTGAATATCATCGACAAGATGTTACATCTACTCCATGTTGGGTTGAAATCCATTTGAATGGTCCATTACAATGGCTTGATCGTGTACTTACACAAATGGGTACACCAAGAAATCCGATTTCATC]
[-] EMBL CD195336             [                                                                                                                                                                                                                                    TCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGCTTTGCCTCCAGTCCTTGTTCCTCGACATAGTGAATACCCTAGTCTTAGTACTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATCTAATCTAGGAATGTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]


>consensus_4336#0 TCTCAAGCAGGCTATGTCAACTCCAATTTCTAGTCTGAACAGTTTATTTTCATTCACATC TCCTGCTGTGAAAAGACTTCTTGGTTGGAAACAAGGAGACGAAGAAGAAAAATGGGCTGA AAAAGCGGTTGATTCACTTGTAAAAAAACTTAAAAAGAAAAAGGGTGCACTTGAAGCTTT AGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCT CGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGT ATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTT CCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGA AAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGACATAGTGAATACCCTAGTCTTAGTAC TGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTC AGCATCTAATCTAGGAATGTTCCCGATGACAGACTCAGCAATGCCCTACAATGTAAATTA TCCACACAACTTCAGTCATTCTCCGTCTCTTCCTCCCGGAAACAGTGGAACTTCTACAGA CAGCACAGTTGCTGGACCTATCCATTCACTTAATAGCTCAAACCTTCAATCTGGTTACCA AACTCAACCCAATCAAGATCCGGCCTCCTCTGGACAAACTATGCATCCAGTCAATTATCA AGAACCTAAATACTGGTGTTCCATTGTTTATTATGAACTAAATAATCGTGTCGGTGAAGC ATTTAACGCTTCACAATTAAGCATAATCATTGATGGTTTTACAGATCCATCAAATAATTC AGATCGTTTTTGTCTTGGCCTTTTGTCGAATGTCAACCGAAACTCTACAATCGAGAATAC AAGACGTCATATTGGAAAAGGTGTTCATCTTTATTATGTTGGTGGCGAAGTATACGCTGA ATGTTTATCGGATAGTAGTATATTTGTACAATCACGTAATTGTAATTATCATCATAATTT TCATCCAACCACAGTGTGTAAAATTCCACCTGGTTGTTCATTGAAAATATTCTCAAATCA AGAATTTGCTCACCTACTTAGTCGTACAGTACATCATGGTTTTGAAGCTGTTTATGAATT AACTAAAATGTGTACAATACGTATGAGTTTTGTAAAAGGTTGGGGTGCTGAATATCATCG ACAAGATGTTACATCTACTCCATGTTGGGTTGAAATCCATTTGAATGGTCCATTACAATG GCTTGATCGTGTACTTACACAAATGGGTACACCAAGAAATCCGATTTCATC



consensusID : consensus_4336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence
                              [AGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGACTCACTTGTAAAAAACTTAAAAAGAAAAAGGGTGCCCTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGCCACCCCGCAATACCCTAGTTTTAGTACCGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATTTAATCTAGGAATGTTCCCGATGACAGACCCAGAGCGGGCCGG]

[-] EMBL CD200819             [AGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGACTCACTTGTAAAAAACTTAAAAAGAAAAAGGGTGCCCTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGCCACCCCGCAATACCCTAGTTTTAGTACCGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTTCAGCATTTAATCTAGGAATGTTCCCGATGACAGACCCAGAGCGGGCCGG]


>consensus_4336#1 AGACGAAGAAGAAAAATGGGCTGAAAAAGCGGTTGACTCACTTGTAAAAAACTTAAAAAG AAAAAGGGTGCCCTTGAAGCTTTAGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAG TGTGTTACTATTCCCCGATCCCTCGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTG CCCCACGTAATCTACTGTCGAGTATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTG AAACCTCTTGATTTCTGTCGTTTCCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAAT CCTTATCACTATCAGCGAGTTGAAAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGCCAC CCCGCAATACCCTAGTTTTAGTACCGTAACTCCATCACCGGGTTTATCACACTGTGGAAG CAGCGGAATGTCTAGTTCCCGTTCAGCATTTAATCTAGGAATGTTCCCGATGACAGACCC AGAGCGGGCCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4336#0      TCTCAAGCAGGCTATGTCAACTCCAATTTCTAGTCTGAACAGTTTATTTTCATTCACATC 60
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      TCCTGCTGTGAAAAGACTTCTTGGTTGGAAACAAGGAGACGAAGAAGAAAAATGGGCTGA 120
consensus_4336#1      ------------------------------------AGACGAAGAAGAAAAATGGGCTGA 24
                                                          ************************

consensus_4336#0      AAAAGCGGTTGATTCACTTGTAAAAAAACTTAAAAAGAAAAAGGGTGCACTTGAAGCTTT 180
consensus_4336#1      AAAAGCGGTTGACTCACTTGTAAAAAA-CTTAAAAAGAAAAAGGGTGCCCTTGAAGCTTT 83
                      ************ ************** ******************** ***********

consensus_4336#0      AGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCT 240
consensus_4336#1      AGAGCGGGCTTTGAGTAATCCTGGTGAACCTTCAGAGTGTGTTACTATTCCCCGATCCCT 143
                      ************************************************************

consensus_4336#0      CGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGT 300
consensus_4336#1      CGATGGTCGACTTCAAGTTTCTCATAGGAAAGGGTTGCCCCACGTAATCTACTGTCGAGT 203
                      ************************************************************

consensus_4336#0      ATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTT 360
consensus_4336#1      ATGGAGGTGGCCAGACTTGCAAAGTCATCATGAGTTGAAACCTCTTGATTTCTGTCGTTT 263
                      ************************************************************

consensus_4336#0      CCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGA 420
consensus_4336#1      CCCGTTTTCAGCTAAAGAAAATGAGGTTTGTATTAATCCTTATCACTATCAGCGAGTTGA 323
                      ************************************************************

consensus_4336#0      AAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGACATAGTG-AATACCCTAGTCTTAGTA 479
consensus_4336#1      AAGTCCGGTTTTGCCTCCAGTCCTTGTTCCTCGCCACCCCGCAATACCCTAGTTTTAGTA 383
                      ********************************* **    * *********** ******

consensus_4336#0      CTGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTT 539
consensus_4336#1      CCGTAACTCCATCACCGGGTTTATCACACTGTGGAAGCAGCGGAATGTCTAGTTCCCGTT 443
                      * **********************************************************

consensus_4336#0      CAGCATCTAATCTAGGAATGTTCCCGATGACAGACTCAGCAATGCCCTACAATGTAAATT 599
consensus_4336#1      CAGCATTTAATCTAGGAATGTTCCCGATGACAGACCCAGAGCGGGCCGG----------- 492
                      ****** **************************** ***    * **             

consensus_4336#0      ATCCACACAACTTCAGTCATTCTCCGTCTCTTCCTCCCGGAAACAGTGGAACTTCTACAG 659
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      ACAGCACAGTTGCTGGACCTATCCATTCACTTAATAGCTCAAACCTTCAATCTGGTTACC 719
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      AAACTCAACCCAATCAAGATCCGGCCTCCTCTGGACAAACTATGCATCCAGTCAATTATC 779
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      AAGAACCTAAATACTGGTGTTCCATTGTTTATTATGAACTAAATAATCGTGTCGGTGAAG 839
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      CATTTAACGCTTCACAATTAAGCATAATCATTGATGGTTTTACAGATCCATCAAATAATT 899
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      CAGATCGTTTTTGTCTTGGCCTTTTGTCGAATGTCAACCGAAACTCTACAATCGAGAATA 959
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      CAAGACGTCATATTGGAAAAGGTGTTCATCTTTATTATGTTGGTGGCGAAGTATACGCTG 1019
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      AATGTTTATCGGATAGTAGTATATTTGTACAATCACGTAATTGTAATTATCATCATAATT 1079
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      TTCATCCAACCACAGTGTGTAAAATTCCACCTGGTTGTTCATTGAAAATATTCTCAAATC 1139
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      AAGAATTTGCTCACCTACTTAGTCGTACAGTACATCATGGTTTTGAAGCTGTTTATGAAT 1199
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      TAACTAAAATGTGTACAATACGTATGAGTTTTGTAAAAGGTTGGGGTGCTGAATATCATC 1259
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      GACAAGATGTTACATCTACTCCATGTTGGGTTGAAATCCATTTGAATGGTCCATTACAAT 1319
consensus_4336#1      ------------------------------------------------------------
                                                                                  

consensus_4336#0      GGCTTGATCGTGTACTTACACAAATGGGTACACCAAGAAATCCGATTTCATC 1371
consensus_4336#1      ----------------------------------------------------
                                                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)