These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 863 fasta sequence [GATGGTCTGAGACCGCCTGCTCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGGCCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGG-GTGTCATGGTCTGTC-GTATGTGGNGNCGGNCCGACCAAGCTNAAATATCATCTTGATAGAGCTAAATCACGTGAAGAACAAGAACGAGTTGTTCGAAAACGTCAAGAGGAAGAACGTGAAGCACAACGTAAACGTCAATTAGAACTACAACAACAAGCTGAACAAATGCGACTTGATCGTGAACGACGTTTAGAAGAAGAACGTGGACGTTTCTTGGAGAAAGCTAAACAAATTATAATTGAACCAGTTGTAGAGGAGAAGAAATCACGT] [+] EMBL CD160515 [GATGGTCTGAGACCGCCTGCTCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTGTTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTTATTGCGTAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATCAATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGATGGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGGCCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGG GTGTCATGGTCTGTC GTATGTG ] [-] EMBL CD118712 [ GACGACCGATGGTGGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGATAGTCAANTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAGGTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGACCGAAATCGGACAATCAGATTAAGGCAGTTCCTGCATCNCAAGCTTTTGTTGNGAAAGGTGT TCATGGTCGGTCNGT NGTGGNGNCGGNCCGACCAAGCTNAAATATCATCTTGATAGAGCTAAATCACGTGAAGAACAAGAACGAGTTGTTCGAAAACGTCAAGAGGAAGAACGTGAAGCACAACGTAAACGTCAATTAGAACTACAACAACAAGCTGAACAAATGCGACTTGATCGTGAACGACGTTTAGAAGAAGAACGTGGACGTTTCTTGGAGAAAGCTAAACAAATTATAATTGAACCAGTTGTAGAGGAGAAGAAATCACGT] consensusID : consensus_4342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [TTTTTTTTTTTTTTTTTTTTTGACATAGATCTTGTATGACATGAGGGATATAATAAATATTACATAACGGAGTTTAGCTGTCATTTTCAACATCCCCCTCGGCTGTTTGGTCACTGGCCCATAACGTCAAGTTGTCTCTTAAAAGTTGCATAATTAGTGTGCTGTCTTTGTAGGAATCATCTTGAAGCTGATCTAGTTCTGCTATTGCTGAATCGAAAGCACTTTTGGCTAACTCGCACGCCTTAGCAGCATCATTTTGAATTTCGTAAAAGAATACAGAGAAGTTGAGAGCTAAACCAAGACGAATTGGATGAGTGGTAGGTAAATTTTCGGCAGCCGTAGTAGCCTTTGTGTAAGCATCCAATGATTCTGGACCACTCTGTCCGAGATCATCAGTGGAACCTCAGCGAGATACGGTATATCGCCTTGATTTT] [+] EMBL AI395047 [TTTTTTTTTTTTTTTTTTTTTGACATAGATCTTGTATGACATGAGGGATATAATAAATATTACATAACGGAGTTTAGCTGTCATTTTCAACATCCCCCTCGGCTGTTTGGTCACTGGCCCATAACGTCAAGTTGTCTCTTAAAAGTTGCATAATTAGTGTGCTGTCTTTGTAGGAATCATCTTGAAGCTGATCTAGTTCTGCTATTGCTGAATCGAAAGCACTTTTGGCTAACTCGCACGCCTTAGCAGCATCATTTTGAATTTCGTAAAAGAATACAGAGAAGTTGAGAGCTAAACCAAGACGAATTGGATGAGTGGTAGGTAAATTTTCGGCAGCCGTAGTAGCCTTTGTGTAAGCATCCAATGATTCTGGACCACTCTGTCCGAGATCATCAGTGGAACCTCAGCGAGATACGGTATATCGCCTTGATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4342#0 GATGGTCTGAGACCGCCTGCTCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGA 60 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 ATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTAC 120 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 GAAGTAGGTGAGGATGGCAAGGTGAGTCCGTGTTGACGAGCAGATAGGTTGTGTTTAGTG 180 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 TTTTGTGCAATTGGTTTGAATATGACCATGGATTGACGAGTGTTATTATGGTTGTTGTTT 240 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 ATTGCGTAGGTACATTTCAAGGTACGATTCGATGCGCAAGGTTTCGCTCCTCAGGACATC 300 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 AATGTGACGTCGAGTGAGAACCGTGTGACGGTACACGCGAAGAAGGAGACGACGACCGAT 360 consensus_4342#1 ------------------------------------------------------------ consensus_4342#0 GGTAGGAAGTGTAGTCGGGAGTTCTGTCGTATGGTGCAGCTGCCGAAGAGTATTGATGAT 420 consensus_4342#1 -----------TTTTTTTTTTTTTTTTTTTTTGACATAGATCTTGTATGACATGAGGGAT 49 * * ** * * * ** ** * * * ** *** consensus_4342#0 AGTCAACTGAAATGTCGCATGACAGATGATGGTGTTTTGATGTTGGAGGCTCCAGTGAAG 480 consensus_4342#1 A--TAAT--AAATATTACATAACGGAGTTTAG--CTGTCATTTTCAACATCCCCCT--CG 101 * ** **** * *** ** ** * * * * ** ** * ** * * consensus_4342#0 GTTGATCAGAACCAGTCGTTGACGCTGAACGAGTCTGGTCAGGTGGCTGTTCGGCCGAAA 540 consensus_4342#1 GCTGTTTGG------TCACTGGCCCATAACG-------TCAAGTTGTCTCTTAA---AAG 145 * ** * * ** ** * * **** *** ** * * ** consensus_4342#0 TCGGACAATCAGATTAAGGCAGTTCCTGCATCACAAGCTCTTGTTGCGAAAGGGTGTCAT 600 consensus_4342#1 TTGCATAATTAGTGT---GCTGTCTTTGTAGGA-ATCATCTTGAAGCTGATCTAGTTCTG 201 * * * *** ** * ** ** ** * * * ***** ** * ** consensus_4342#0 GGTCTGTCGTATGTGGNGNCGGNCCGACCAAGCTNAA-ATATCATCTTGATAGAGCTAAA 659 consensus_4342#1 CTATTGCTGAATCGAAAGCACTTTTGGCTAACTCGCACGCCTTAGCAGCATCATTTTGAA 261 ** * ** * * * ** * * * * ** * ** consensus_4342#0 TCACGTGAA-GAACAAGAACGAGTTGTTCGAAAACGTCAAGAGGAAGAACGTGAAGCACA 718 consensus_4342#1 TTTCGTAAAAGAATACAGAGAAGTTGAGAGCTAA-ACCAAGACGAATTGGATGA-GTGGT 319 * *** ** *** * * ***** * ** ***** *** *** * consensus_4342#0 ACGTAAACGTCAATTAGAACTACAACAACAAGCTGAACAAATGCGACTTGATCGTGAACG 778 consensus_4342#1 AGGTAAATTTTCGGCAG--CCGTAGTAGCCT-TTGTGTAAGCATCCAATGATTCTGGACC 376 * ***** * ** * * * * ** ** **** ** ** consensus_4342#0 ACGTTTAGAAGAAGAACGTGGACGTTTCTTGGAGAAAGCTAAACAAATTATAATTGAACC 838 consensus_4342#1 AC--TCTGTCCGAGATCATCAGTGGAACCTC-----AGCGAGATACGGTATA-TCGCCTT 428 ** * * *** * * * * * *** * * * **** * * consensus_4342#0 AGTTGTAGAGGAGAAGAAATCACGT 863 consensus_4342#1 GATTTT------------------- 434 ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||