cluster # 4348

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Schistosoma mansoni
cluster # 4348 cluster # 4348 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4348#0 length = 563 sequences # 2

consensus_4348#1 length = 298 sequences # 1

consensusID : consensus_4348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 563
fasta sequence

                              [ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAATCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACTTTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGCACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTTTGTTTATTTTTGCGCCTGTGTTGTACCAGGAGAGTGGTGTATTGAGTATGGTTGTAGCATCATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGATCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATGGTCAGAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACTCAACATTCACTGGCCGGATACCATC]

[-] EMBL CD063929             [ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAATCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACTTTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGCACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTTTGTTTATTTTTGCGCCTGTGTTGTACCAG                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD087775             [                                                                                                                                                                                                   TGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTTTGTTTATTTTTGAGGTTGTGGCGAAGATGGAGAGTGGTGTATTGAGTATGGTTGTAGCATCATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGACCGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGATCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATGGTCAGAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACTCAACATTCACTGGCCGGATACCATC]




>consensus_4348#0
ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAA
TCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACT
TTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGC
ACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTT
TGTTTATTTTTGCGCCTGTGTTGTACCAGGAGAGTGGTGTATTGAGTATGGTTGTAGCAT
CATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGAC
CGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAAT
CAGATCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACT
ACTACAACCATGGTCAGAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACTCA
ACATTCACTGGCCGGATACCATC

consensusID : consensus_4348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [AGAAACTCTGGAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCATCATTGATGAACGAGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGACGGCATTCCTACAATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGAATCTTCAGCACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATCGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACTCAACATTCAC]

[+] EMBL CD191459             [AGAAACTCTGGAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCATCATTGATGAACGAGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGACGGCATTCCTACAATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGAATCTTCAGCACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCATCGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACTCAACATTCAC]




>consensus_4348#1
AGAAACTCTGGAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCATCATTGATGAACG
AGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGACGGCATTCCTACA
ATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAATCAGAATCTTCAG
CACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAACTACTACAACCAT
CGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACTCAACATTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4348#0      ACCACATACACATGTGACATCACAAATAACATTTCAGCTGCACATGATACAGTCACTCAA 60
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      TCACTCATTCATCAAAGTCTAATTAACGACTAGTTGTTCATAGAAGTCGTTAATTAGACT 120
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      TTGATGAATGAGTGATTGAGTGACTGAATGAATTGGTTGTTGAGAATTGAGTAGTTTCGC 180
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      ACTGTTATTGTATTTTGATAGTGAGCTCTTAGTACTTGTGTATGGATGTGTATTTGCGTT 240
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      TGTTTATTTTTGCGCCTGTGTTGTACCAGGAGAGTGGTGTATTGAGTATGGTTGTAGCAT 300
consensus_4348#1      ----------AGAAACTCTG--GAAGATGTGGAATCATTCACGTACTTGGTTAGTAGCAT 48
                                 *   ** **  * *   *  ** *  *  *   * *  * * *******

consensus_4348#0      CATTGATGAACAAGGAGGATCTGGTGCAGACGTAAAGGCGAGGATGGGCAAAGCAAGGAC 360
consensus_4348#1      CATTGATGAACGAGGAGGATCTGATGCAGATGCAAAGGCGAGGATGGGCAAAGCAAGGAC 108
                      *********** *********** ****** * ***************************

consensus_4348#0      CGCATTCCTACAATTGAAGAACATGTGGGACTCAAAACAACTCTCAACTAATTTCAAAAT 420
consensus_4348#1      GGCATTCCTACAATTGAAGAACATATGGGACTCAAAACAACTCTCAACTAATTTCAAAAT 168
                       *********************** ***********************************

consensus_4348#0      CAGA-TCTTCAACACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAAC 479
consensus_4348#1      CAGAATCTTCAGCACGAACGTCAAGATAGTCCTACTGTACGGAGCTGAAAATTGGAGAAC 228
                      **** ****** ************************************************

consensus_4348#0      TACTACAACCATGGTCA-GAAGGTACAAGTATTTATAAACAGTTGTCTACGCAAAATACT 538
consensus_4348#1      TACTACAACCATCGTCAAGAAGGTACAAGTATTTATGAACAGTTGTCTACGCAAAATACT 288
                      ************ **** ****************** ***********************

consensus_4348#0      CAACATTCACTGGCCGGATACCATC 563
consensus_4348#1      CAACATTCAC--------------- 298
                      **********