cluster # 4349

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Schistosoma mansoni
cluster # 4349 cluster # 4349 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4349#0 length = 391 sequences # 1

consensus_4349#1 length = 271 sequences # 1
consensus_4349#2 length = 202 sequences # 1

consensusID : consensus_4349#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [TGATCTGACATGTAGGTTAGGGAAGGGAGCTTCCTATGAGGAAATCAAGGCTGCAGTTAAAGCAGCTGCATCTGGACCATTGAAGGGGATTTTGGAATACACTGAAGATGAGGTTGTCAGTTCAGACTTTGTTGGAAGTACCAGTTCATCTATCTTTGATGCGAAGGCTGGGATATCTCTTAACAACAACTTCGTGAAATTAGTTTCATGGTATGATAATGAGTTTGGATACAGATGCCGCGTAGTTGATCTCATTACGCACATGCATAAAGTCGACCATGCATAATGAAGTAGTTTCAACTGTAGCCGACTAACTNTTTGTCAATCGATAGATAACGAATAAAGCGTTAATCTGCCAAAAATGGATTGGAAAATTCCTAGCAATATAACT]

[+] EMBL AI976193             [TGATCTGACATGTAGGTTAGGGAAGGGAGCTTCCTATGAGGAAATCAAGGCTGCAGTTAAAGCAGCTGCATCTGGACCATTGAAGGGGATTTTGGAATACACTGAAGATGAGGTTGTCAGTTCAGACTTTGTTGGAAGTACCAGTTCATCTATCTTTGATGCGAAGGCTGGGATATCTCTTAACAACAACTTCGTGAAATTAGTTTCATGGTATGATAATGAGTTTGGATACAGATGCCGCGTAGTTGATCTCATTACGCACATGCATAAAGTCGACCATGCATAATGAAGTAGTTTCAACTGTAGCCGACTAACTNTTTGTCAATCGATAGATAACGAATAAAGCGTTAATCTGCCAAAAATGGATTGGAAAATTCCTAGCAATATAACT]




>consensus_4349#0
TGATCTGACATGTAGGTTAGGGAAGGGAGCTTCCTATGAGGAAATCAAGGCTGCAGTTAA
AGCAGCTGCATCTGGACCATTGAAGGGGATTTTGGAATACACTGAAGATGAGGTTGTCAG
TTCAGACTTTGTTGGAAGTACCAGTTCATCTATCTTTGATGCGAAGGCTGGGATATCTCT
TAACAACAACTTCGTGAAATTAGTTTCATGGTATGATAATGAGTTTGGATACAGATGCCG
CGTAGTTGATCTCATTACGCACATGCATAAAGTCGACCATGCATAATGAAGTAGTTTCAA
CTGTAGCCGACTAACTNTTTGTCAATCGATAGATAACGAATAAAGCGTTAATCTGCCAAA
AATGGATTGGAAAATTCCTAGCAATATAACT

consensusID : consensus_4349#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [GAGTAATAAATGCAAACGTCTCTTGCCTACGTGATTCGAGGTTGCTTCGCGTTTGACTTCACGGGACGACTCTGAAATGTTAGGTAAACTTGAGTTATGGTGAACGAAAAATCAGACGGAATGTCAACGCACAGATCTAGGCTGCGGGCAAACGAGAAGCACGTTTACTAAGCAACTTAGACGACCACGCACGCACAAACTCTCATCAATTAAAAGCCATACATTCTCAGTAGCTTATTCATAAAGCACTTAACTTATTTAGGGGCGACCG]

[+] EMBL CD136030             [GAGTAATAAATGCAAACGTCTCTTGCCTACGTGATTCGAGGTTGCTTCGCGTTTGACTTCACGGGACGACTCTGAAATGTTAGGTAAACTTGAGTTATGGTGAACGAAAAATCAGACGGAATGTCAACGCACAGATCTAGGCTGCGGGCAAACGAGAAGCACGTTTACTAAGCAACTTAGACGACCACGCACGCACAAACTCTCATCAATTAAAAGCCATACATTCTCAGTAGCTTATTCATAAAGCACTTAACTTATTTAGGGGCGACCG]




>consensus_4349#1
GAGTAATAAATGCAAACGTCTCTTGCCTACGTGATTCGAGGTTGCTTCGCGTTTGACTTC
ACGGGACGACTCTGAAATGTTAGGTAAACTTGAGTTATGGTGAACGAAAAATCAGACGGA
ATGTCAACGCACAGATCTAGGCTGCGGGCAAACGAGAAGCACGTTTACTAAGCAACTTAG
ACGACCACGCACGCACAAACTCTCATCAATTAAAAGCCATACATTCTCAGTAGCTTATTC
ATAAAGCACTTAACTTATTTAGGGGCGACCG

consensusID : consensus_4349#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [ACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATCATCAAGTCGGATGGAAGAGTCGCCGACTCCAGTTGATCGCTCTTCATGTCGACCACACTTGCACCAATCCCATCCACACACGATGAATCACCCGTACCAACGACAGGTCCAACCTCAGACAACCTTCCCTTCTCCAGGTGTCGTCGAT]

[+] EMBL CD142901             [ACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATCATCAAGTCGGATGGAAGAGTCGCCGACTCCAGTTGATCGCTCTTCATGTCGACCACACTTGCACCAATCCCATCCACACACGATGAATCACCCGTACCAACGACAGGTCCAACCTCAGACAACCTTCCCTTCTCCAGGTGTCGTCGAT]




>consensus_4349#2
ACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATCATCAAG
TCGGATGGAAGAGTCGCCGACTCCAGTTGATCGCTCTTCATGTCGACCACACTTGCACCA
ATCCCATCCACACACGATGAATCACCCGTACCAACGACAGGTCCAACCTCAGACAACCTT
CCCTTCTCCAGGTGTCGTCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4349#1      ---------GAGTAATAAATGCAAACGTCTCTTGCCTACGTGATTCGAGGTTGCT-TCGC 50
consensus_4349#2      ---------ACGTCACGATCG-AAACTCATCTCACC-ACGT---TCAA--TCACTCTCAC 44
consensus_4349#0      TGATCTGACATGTAGGTTAGGGAAGGGAGCTTCCTATGAGGAAATCAAGGCTGCAGTTAA 60
                                 **       * **       *       *    ** *     *  *   

consensus_4349#1      GTTTGACTTCACGGGACGACTCTGAAATGTTA---GGTAAACTTGAGTTATGGT----GA 103
consensus_4349#2      ATCTGTCATCATCAAGTCGGATGGAAGAGTC-----GCCGACTCCAGTTG---------- 89
consensus_4349#0      AGCAGCTGCATCTGGACCATTGAAGGGGATTTTGGAATACACTGAAGATGAGGTTGTCAG 120
                          *                        *          ***  ** *           

consensus_4349#1      ACGAAAAATCAGACGGAATGTCAACGCACAGATCTAGGCTGCGGGCAAACGAGAAGCACG 163
consensus_4349#2      ATCGCTCTTCATGTCGACCACACTTGCACCAATCCCATCCACACACGAT---GAATCACC 146
consensus_4349#0      TTCAGACTTTGTTGGAAGTACCAGTTCATCTATCTTTGATGCGAAGGCT--GGGATATCT 178
                              *       *         **   ***       *          * *   * 

consensus_4349#1      TTTACTAAGCAACTTAG-------ACGACCACGCACGCACAAACTCTCATCAATTAAAAG 216
consensus_4349#2      CGTACCAA-CGAC-----------AGGTCCAACCTCAGACAACCTTCCCTTCTCCAGGTG 194
consensus_4349#0      CTTAACAA-CAACTTCGTGAAATTAGTTTCATGGTATGATAATGAGTTTGGATACAGATG 237
                        **  ** * **           *    **       * **             *   *

consensus_4349#1      CCA-----TACATTCTCAGTAGCTTATTCATAAAGCACTTAACTTATTTAGGGGCGACCG 271
consensus_4349#2      TCG-----TCGAT----------------------------------------------- 202
consensus_4349#0      CCGCGTAGTTGATCTCATTACGCACATGCATAAAGTCGACCATGCATAATGAAGTAGTTT 297
                       *      *  **                                               

consensus_4349#1      ------------------------------------------------------------
consensus_4349#2      ------------------------------------------------------------
consensus_4349#0      CAACTGTAGCCGACTAACTNTTTGTCAATCGATAGATAACGAATAAAGCGTTAATCTGCC 357
                                                                                  

consensus_4349#1      ----------------------------------
consensus_4349#2      ----------------------------------
consensus_4349#0      AAAAATGGATTGGAAAATTCCTAGCAATATAACT 391